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Aliases for HMMR-AS1 Gene

Subcategory (RNA class) for HMMR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HMMR-AS1 Gene

  • HMMR Antisense RNA 1 2 3 5

External Ids for HMMR-AS1 Gene

Previous GeneCards Identifiers for HMMR-AS1 Gene

  • GC05M162910

Summaries for HMMR-AS1 Gene

GeneCards Summary for HMMR-AS1 Gene

HMMR-AS1 (HMMR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMMR-AS1 Gene

Genomics for HMMR-AS1 Gene

Regulatory Elements for HMMR-AS1 Gene

Enhancers for HMMR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F163457 1.1 ENCODE 11.7 +33.4 33406 6.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CCNG1 MAT2B HMMR-AS1 LOC105377700 NUDCD2 HMMR
GH05F163436 1.1 ENCODE 10.1 +56.0 56031 3.8 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS SP3 SP5 NFYC NUDCD2 HMMR HMMR-AS1 LOC105377700 GC05M163448
GH05F163434 1 Ensembl ENCODE 10.1 +59.5 59458 0.4 HDAC1 TAL1 NCOR1 GATA2 ZSCAN29 NR2F6 RNF2 NR2F1 DPF2 ZEB2 NUDCD2 HMMR HMMR-AS1 CCNG1 ENSG00000250114
GH05F163489 0.6 ENCODE 0.8 +4.8 4849 0.2 CTCF CEBPA CEBPB KDM1A CEBPG RAD21 TRIM28 HMMR-AS1 HMMR
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMMR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMMR-AS1 Gene

Chromosome:
5
Start:
163,482,604 bp from pter
End:
163,494,058 bp from pter
Size:
11,455 bases
Orientation:
Minus strand

Genomic View for HMMR-AS1 Gene

Genes around HMMR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMMR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMMR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMMR-AS1 Gene

Proteins for HMMR-AS1 Gene

Post-translational modifications for HMMR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMMR-AS1 Gene

Domains & Families for HMMR-AS1 Gene

Gene Families for HMMR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMMR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMMR-AS1 Gene

Function for HMMR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMMR-AS1 Gene

Localization for HMMR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMMR-AS1 Gene

Pathways & Interactions for HMMR-AS1 Gene

SuperPathways for HMMR-AS1 Gene

No Data Available

Interacting Proteins for HMMR-AS1 Gene

Gene Ontology (GO) - Biological Process for HMMR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMMR-AS1 Gene

Transcripts for HMMR-AS1 Gene

mRNA/cDNA for HMMR-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMMR-AS1 Gene

No ASD Table

Relevant External Links for HMMR-AS1 Gene

GeneLoc Exon Structure for
HMMR-AS1
ECgene alternative splicing isoforms for
HMMR-AS1

Expression for HMMR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMMR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HMMR-AS1 Gene

This gene is overexpressed in Testis (x23.2).
genes like me logo Genes that share expression patterns with HMMR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMMR-AS1 Gene

Orthologs for HMMR-AS1 Gene

Evolution for HMMR-AS1 Gene

ENSEMBL:
Gene Tree for HMMR-AS1 (if available)
TreeFam:
Gene Tree for HMMR-AS1 (if available)

No data available for Orthologs for HMMR-AS1 Gene

Paralogs for HMMR-AS1 Gene

No data available for Paralogs for HMMR-AS1 Gene

Variants for HMMR-AS1 Gene

Sequence variations from dbSNP and Humsavar for HMMR-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10056017 -- 163,495,782(+) taatt(C/T)acaga upstream-variant-2KB
rs10071366 -- 163,488,266(+) ggtcc(C/T)gtcag intron-variant
rs10078795 -- 163,488,030(+) tttct(A/G)ctttt intron-variant
rs10515860 -- 163,490,702(+) TGACT(A/G)TTTTC intron-variant
rs10866742 -- 163,482,309(+) CTCCA(G/T)CCTTT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HMMR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1017056 CNV gain 25217958
nsv1029437 CNV gain 25217958
nsv519801 CNV loss 19592680
nsv524084 CNV loss 19592680
nsv830538 CNV gain+loss 17160897

Relevant External Links for HMMR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMMR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMMR-AS1 Gene

Disorders for HMMR-AS1 Gene

Relevant External Links for HMMR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMMR-AS1

No disorders were found for HMMR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMMR-AS1 Gene

Publications for HMMR-AS1 Gene

  1. HMMR antisense RNA 1, a novel long noncoding RNA, regulates the progression of basal-like breast cancer cells. (PMID: 27920576) Liu W. … Zhang H. (Breast Cancer (Dove Med Press) 2016) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HMMR-AS1 Gene

Sources for HMMR-AS1 Gene

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