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Aliases for HMMR-AS1 Gene

Subcategory (RNA class) for HMMR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HMMR-AS1 Gene

  • HMMR Antisense RNA 1 2 3 5

External Ids for HMMR-AS1 Gene

Previous GeneCards Identifiers for HMMR-AS1 Gene

  • GC05M162910

Summaries for HMMR-AS1 Gene

GeneCards Summary for HMMR-AS1 Gene

HMMR-AS1 (HMMR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HMMR-AS1 include Retinitis Pigmentosa 11.

Additional gene information for HMMR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMMR-AS1 Gene

Genomics for HMMR-AS1 Gene

GeneHancer (GH) Regulatory Elements for HMMR-AS1 Gene

Promoters and enhancers for HMMR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I163457 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.8 +33.4 33406 6 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B NUDCD2 HMMR CCNG1 MAT2B HMMR-AS1 LOC105377700 GC05P163387
GH05I163436 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.1 +56.0 56031 3.8 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 CCNG1 LOC105377700 NUDCD2 HMMR HMMR-AS1 GC05M163448 GC05P163387
GH05I163434 Enhancer 1 Ensembl ENCODE 10.1 +59.5 59457 0.4 HDAC1 ATF1 YY1 ZNF335 TCF12 ATF7 ZEB2 NR2F2 ZNF592 NFIC NUDCD2 HMMR HMMR-AS1 CCNG1 LOC105377700 ENSG00000250114 GC05P163387
GH05I163515 Enhancer 0.3 dbSUPER 10.4 -23.4 -23409 3.1 PAF1 HMMR-AS1 CCNG1 MAT2B GC05P163619 GC05P163387
GH05I163489 Enhancer 0.7 ENCODE dbSUPER 0.8 +4.8 4848 0.2 CTCF CEBPA CEBPB ZNF143 CEBPG RAD21 HMMR-AS1 HMMR GC05P163387
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMMR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMMR-AS1 Gene

Genomic Locations for HMMR-AS1 Gene
chr5:163,482,604-163,494,058
(GRCh38/hg38)
Size:
11,455 bases
Orientation:
Minus strand
chr5:162,910,071-162,921,064
(GRCh37/hg19)

Genomic View for HMMR-AS1 Gene

Genes around HMMR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMMR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMMR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMMR-AS1 Gene

Proteins for HMMR-AS1 Gene

Post-translational modifications for HMMR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMMR-AS1 Gene

Domains & Families for HMMR-AS1 Gene

Gene Families for HMMR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMMR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMMR-AS1 Gene

Function for HMMR-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMMR-AS1 Gene

Localization for HMMR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMMR-AS1 Gene

Pathways & Interactions for HMMR-AS1 Gene

SuperPathways for HMMR-AS1 Gene

No Data Available

Interacting Proteins for HMMR-AS1 Gene

Gene Ontology (GO) - Biological Process for HMMR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMMR-AS1 Gene

Drugs & Compounds for HMMR-AS1 Gene

No Compound Related Data Available

Transcripts for HMMR-AS1 Gene

mRNA/cDNA for HMMR-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMMR-AS1 Gene

No ASD Table

Relevant External Links for HMMR-AS1 Gene

GeneLoc Exon Structure for
HMMR-AS1
ECgene alternative splicing isoforms for
HMMR-AS1

Expression for HMMR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMMR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HMMR-AS1 Gene

This gene is overexpressed in Testis (x23.2).
genes like me logo Genes that share expression patterns with HMMR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMMR-AS1 Gene

Orthologs for HMMR-AS1 Gene

Evolution for HMMR-AS1 Gene

ENSEMBL:
Gene Tree for HMMR-AS1 (if available)
TreeFam:
Gene Tree for HMMR-AS1 (if available)

No data available for Orthologs for HMMR-AS1 Gene

Paralogs for HMMR-AS1 Gene

No data available for Paralogs for HMMR-AS1 Gene

Variants for HMMR-AS1 Gene

Sequence variations from dbSNP and Humsavar for HMMR-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000028787 -- 163,494,971(-) G/A upstream_transcript_variant
rs1000074451 -- 163,494,607(-) C/T upstream_transcript_variant
rs1000080869 -- 163,493,763(-) T/C non_coding_transcript_variant
rs1000751940 -- 163,483,853(-) T/A intron_variant
rs1000933849 -- 163,487,749(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HMMR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1017056 CNV gain 25217958
nsv1029437 CNV gain 25217958
nsv519801 CNV loss 19592680
nsv524084 CNV loss 19592680
nsv830538 CNV gain+loss 17160897

Additional Variant Information for HMMR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMMR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMMR-AS1 Gene

Disorders for HMMR-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HMMR-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for HMMR-AS1

genes like me logo Genes that share disorders with HMMR-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HMMR-AS1 Gene

Publications for HMMR-AS1 Gene

  1. HMMR antisense RNA 1, a novel long noncoding RNA, regulates the progression of basal-like breast cancer cells. (PMID: 27920576) Liu W … Zhang H (Breast cancer (Dove Medical Press) 2016) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for HMMR-AS1 Gene

Sources for HMMR-AS1 Gene

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