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Aliases for HMMR-AS1 Gene

Subcategory (RNA class) for HMMR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HMMR-AS1 Gene

  • HMMR Antisense RNA 1 2 3 5

External Ids for HMMR-AS1 Gene

Previous GeneCards Identifiers for HMMR-AS1 Gene

  • GC05M162910

Summaries for HMMR-AS1 Gene

GeneCards Summary for HMMR-AS1 Gene

HMMR-AS1 (HMMR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HMMR-AS1 include Retinitis Pigmentosa 11.

Additional gene information for HMMR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMMR-AS1 Gene

Genomics for HMMR-AS1 Gene

Regulatory Elements for HMMR-AS1 Gene

Enhancers for HMMR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H163457 1.4 ENCODE dbSUPER 11.7 +33.4 33406 6 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 CCNG1 MAT2B HMMR-AS1 LOC105377700 NUDCD2 HMMR
GH05H163434 1.1 Ensembl ENCODE 10.1 +59.5 59458 0.4 HDAC1 ATF1 YY1 TCF12 GATA2 ATF7 ZEB2 NR2F2 ZNF592 NFIC HMMR NUDCD2 HMMR-AS1 CCNG1 ENSG00000250114
GH05H163436 1.1 ENCODE 10.1 +56.0 56031 3.8 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 NUDCD2 HMMR HMMR-AS1 LOC105377700 GC05M163448
GH05H163515 0.4 dbSUPER 10.4 -23.4 -23409 3.1 PAF1 HMMR-AS1 CCNG1 MAT2B GC05P163619
GH05H163489 0.8 ENCODE dbSUPER 0.7 +4.8 4849 0.2 CTCF CEBPA CEBPB CEBPG RAD21 TRIM28 HMMR-AS1 HMMR
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMMR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMMR-AS1 Gene

Genomic Locations for HMMR-AS1 Gene
chr5:163,482,604-163,494,058
(GRCh38/hg38)
Size:
11,455 bases
Orientation:
Minus strand
chr5:162,910,071-162,921,064
(GRCh37/hg19)

Genomic View for HMMR-AS1 Gene

Genes around HMMR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMMR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMMR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMMR-AS1 Gene

Proteins for HMMR-AS1 Gene

Post-translational modifications for HMMR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMMR-AS1 Gene

Domains & Families for HMMR-AS1 Gene

Gene Families for HMMR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMMR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMMR-AS1 Gene

Function for HMMR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMMR-AS1 Gene

Localization for HMMR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMMR-AS1 Gene

Pathways & Interactions for HMMR-AS1 Gene

SuperPathways for HMMR-AS1 Gene

No Data Available

Interacting Proteins for HMMR-AS1 Gene

Gene Ontology (GO) - Biological Process for HMMR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMMR-AS1 Gene

Drugs & Compounds for HMMR-AS1 Gene

No Compound Related Data Available

Transcripts for HMMR-AS1 Gene

mRNA/cDNA for HMMR-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMMR-AS1 Gene

No ASD Table

Relevant External Links for HMMR-AS1 Gene

GeneLoc Exon Structure for
HMMR-AS1
ECgene alternative splicing isoforms for
HMMR-AS1

Expression for HMMR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMMR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HMMR-AS1 Gene

This gene is overexpressed in Testis (x23.2).
genes like me logo Genes that share expression patterns with HMMR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMMR-AS1 Gene

Orthologs for HMMR-AS1 Gene

Evolution for HMMR-AS1 Gene

ENSEMBL:
Gene Tree for HMMR-AS1 (if available)
TreeFam:
Gene Tree for HMMR-AS1 (if available)

No data available for Orthologs for HMMR-AS1 Gene

Paralogs for HMMR-AS1 Gene

No data available for Paralogs for HMMR-AS1 Gene

Variants for HMMR-AS1 Gene

Sequence variations from dbSNP and Humsavar for HMMR-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000028787 -- 163,494,971(+) GCTCC(A/G)CTTCC upstream-variant-2KB
rs1000074451 -- 163,494,607(+) TTATT(C/T)TAATT upstream-variant-2KB
rs1000080869 -- 163,493,763(+) TACTG(C/T)AGCTG nc-transcript-variant
rs1000751940 -- 163,483,853(+) CTTTT(A/T)TACCT intron-variant
rs1000933849 -- 163,487,749(+) TCAGT(A/G)GTAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HMMR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1017056 CNV gain 25217958
nsv1029437 CNV gain 25217958
nsv519801 CNV loss 19592680
nsv524084 CNV loss 19592680
nsv830538 CNV gain+loss 17160897

Relevant External Links for HMMR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMMR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMMR-AS1 Gene

Disorders for HMMR-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HMMR-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for HMMR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMMR-AS1
genes like me logo Genes that share disorders with HMMR-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HMMR-AS1 Gene

Publications for HMMR-AS1 Gene

  1. HMMR antisense RNA 1, a novel long noncoding RNA, regulates the progression of basal-like breast cancer cells. (PMID: 27920576) Liu W … Zhang H (Breast cancer (Dove Medical Press) 2016) 2 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for HMMR-AS1 Gene

Sources for HMMR-AS1 Gene

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