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HMMR Gene

protein-coding   GIFtS: 57

GC05P162820
hyaluronan-mediated motility receptor (RHAMM)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CD168 1, 2
IHABP 2, 3
MGC119494 2
MGC119495 2
RHAMM 1, 2, 3
Descriptions
CD168 antigen 3
Intracellular hyaluronic acid-binding protein 3
Receptor for hyaluronan-mediated motility 3
hyaluronan-mediated motility receptor 2
hyaluronan-mediated motility receptor (RHAMM) 2
intracellular hyaluronic acid binding protein 2
External Ids
HGNC: 50121
Entrez Gene: 31612
UniProtKB: O753303
Ensembl: ENSG000000725717
Search outside databases for aliases for HMMR gene

Previous GC identifers: GC05P163090 GC05P163480 GC05P162822 GC05P162868

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for HMMR:
The protein encoded by this gene is involved in cell motility. It is expressed in breast tissue and
together with other proteins, it forms a complex with BRCA1 and BRCA2, thus is potentially
associated with higher risk of breast cancer. Alternatively spliced transcript variants encoding
different isoforms have been noted for this gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: HMMR_HUMAN, O75330
Function: Involved in cell motility. When hyaluronan binds to HMMR, the phosphorylation of a number
of proteins, including the focal adhesion kinase occurs. May also be involved in cellular
transformation and metastasis formation, and in regulating extracellular-regulated kinase (ERK)
activity

Gene Wiki entry for HMMR (Hyaluronan-mediated_motility_receptor)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the HMMR gene  

Entrez Gene cytogenetic band: 5q33.2-qter   Ensembl cytogenetic band:  5q34   HGNC cytogenetic band: 5q33.2-qter

HMMR Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P162820:     (about GC identifiers)

Start:
162,820,241 bp from pter
End:
162,851,525 bp from pter
Size:
31,285 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000005.8  NT_023133.12  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: HMMR_HUMAN, O75330 (See protein sequence)
Recommended Name: Hyaluronan mediated motility receptor  
Size: 724 amino acids; 84100 Da
Subunit: Subunit of the HARC complex
Subcellular location: Cell surface. Cytoplasm (By similarity)
Secondary accessions: Q92767
Alternative splicing: 2 isoforms:  O75330-1   O75330-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (4 alternative transcripts): 
    NP_001136028.1  NP_001136029.1  NP_036616.2  NP_036617.2  


    ENSEMBL proteins: 
    ENSP00000377492 ENSP00000185942 ENSP00000351554 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (CD168)
    Browse Abnova for Human Recombinant Proteins
                   OriGene Purified Recombinant Human Proteins (see all 2): HMMR  

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm IEA--
    GO:0009986 cell surface IEA--
    About this table

    Antibodies for HMMR: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse Antibodies at Sigma-Aldrich
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (CD168), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for HMMR

    Assays for HMMR: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: O75330

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (HMMR)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_012484

                  Applied Biosystems Silencer® siRNAs for HMMR

                  Sigma-Aldrich siRNA for HMMR  
                         Sigma-Aldrich shRNA Panels and shRNA for HMMR  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 4): NM_001142556
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): NM_001142556
                                     untagged cDNA clones in CMV expression vector (see all 4): NM_001142556 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_001142556

    UniProtKB/Swiss-Prot: HMMR_HUMAN, O75330
    Function: Involved in cell motility. When hyaluronan binds to HMMR, the phosphorylation of a number
    of proteins, including the focal adhesion kinase occurs. May also be involved in cellular
    transformation and metastasis formation, and in regulating extracellular-regulated kinase (ERK)
    activity

    Genatlas biochemistry entry for HMMR:
    hyaluronan-mediated motility receptor,involved in signal transduction via Src tyrosine kinase
    family,expressed in the cytoplasm,nucleus,and cell surface,five isoforms
    (58,60,64,70,84kDa),regulating cell motility and cell cycle

    2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Hmmr):

    reproductive systemtumorigenesis

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005540 hyaluronic acid binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for HMMR (Maps provided by GeneGo):
     Putative FAK1 pathway

       GeneDecks  HMMR for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for HMMR):
     hsa04512 ECM-receptor interaction

       GeneDecks  HMMR for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  HMMR 


    5/16 Interacting proteins for HMMR (ENSP000003515543) via UniProtKB, MINT, and/or STRING (see all 16 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CD44ENSP000002783853STRING (score=.966)
    CALM3ENSP000002912953STRING (score=.939)
    TP53ENSP000002693053STRING (score=.895)
    ARENSP000003638223STRING (score=.888)
    CD40LGENSP000003596633STRING (score=.842)
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for HMMR
    2 Novoseek chemical compound relationships for HMMR gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    chondroitin sulfate 22.04 1 9601098 (1)
    tyrosine 10.02 5 8750188 (2), 12793201 (1), 1380898 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (HMMR)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_012484

                  Sigma-Aldrich siRNA for HMMR  
                         Sigma-Aldrich shRNA Panels and shRNA for HMMR  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001142556  NM_001142557  NM_012484  NM_012485  

    REFSEQ mRNAs for HMMR gene (4 alternative transcripts): 

    NM_001142556.1   NM_001142557.1   NM_012484.2   NM_012485.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001142556  NM_001142557  NM_012484  NM_012485  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 4): NM_001142556
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): NM_001142556
                                     untagged cDNA clones in CMV expression vector (see all 4): NM_001142556 

    Additional cDNA sequence: 

    AF032862.1 AK290577.1 AK302975.1 AK303616.1 AK313603.1 AY623426.1 BC002966.1 BC017793.1 
    BC030505.2 BC033568.1 BC057235.1 BC070281.1 BC107869.1 BC108904.1 BC108905.1 CR592683.1 
    CR601287.1 U29343.1 

    13 DOTS entries:

    DT.91706417  DT.100791432  DT.99969051  DT.91749528  DT.95271259  DT.100714653  DT.92022397  DT.75169576 
    DT.120888710  DT.100791427  DT.92019707  DT.92023184  DT.91789912 

    24/172 AceView cDNA sequences (see all 172 ):

    BE327167 AI209041 CB132559 AF032862 AW057729 BM788751 BQ027031 CR601287 
    AA743743 BM725946 BQ010466 BE042983 BM764295 BE892436 BM772368 AA831946 
    AA553484 AA262978 AA687269 CA443399 NM_012485 AI088336 BM849217 BM680960 

    highest scoring ESTs for HMMR:

    AF032862 AA164270 AA262978 AA410932 AA460915 AA461217 AA593010 AA612782 AA632211 AA687269 

    Unigene Cluster for HMMR:

    Hyaluronan-mediated motility receptor (RHAMM)
    Hs.72550  [show with all ESTs]
    Unigene Representative Sequence: NM_001142556


    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for HMMR (see all 6 )

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18a · 18b ^ 19
    SP1:                                -                                                                                                               
    SP2:                                -                                                                                                               
    SP3:                                -     -                                                                                                         
    SP4:        -     -                 -     -                                                                                                         
    SP5:                                                                                                                                                

    About this scheme

    ECgene alternative splicing isoforms for HMMR

    3 Ensembl transcripts including schematic representations:
    ENST00000393915  ENST00000353866  ENST00000358715  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    HMMR expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for HMMR

    1 / 2 / 3

    5 probe-sets matching HMMR gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    36863_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 AF032862 1.00 1.00 1.00 1

    207165_at2, 3 U133-A 1 1.00 1.00 -- -- NM_012485 0.60 1.00 0.82 1

    209709_s_at2, 3 U133-A 1 1.00 1.00 -- -- U29343 0.80 1.00 0.91 1

    207165_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    209709_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  HMMR for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TCTACTCAGC

    SOURCE GeneReport for Unigene cluster: Hs.72550

    Expression variation in blood from EXPOLDB for HMMR

    UniProtKB/Swiss-Prot: HMMR_HUMAN, O75330
    Tissue specificity: Expressed in breast cancer cell lines and in normal breast tissue

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for HMMR gene from 5/8 species (see all 8 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    HMMR1   -- hyaluronan-mediated motility receptor (RHAMM) 87.88(n)
    86.7(a)
    611838  XM_849558.1  XP_854651.1 
    chimpanzee
    (Pan troglodytes)
    HMMR1   -- hyaluronan-mediated motility receptor (RHAMM) 99.13(n)
    98.34(a)
    737973  XM_001145921.1  XP_001145921.1 
    cow
    (Bos taurus)
    HMMR1   -- hyaluronan-mediated motility receptor (RHAMM) 87.02(n)
    82.51(a)
    281227  XM_590028.3  XP_590028.3 
    rat
    (Rattus norvegicus)
    Hmmr1   -- hyaluronan mediated motility receptor (RHAMM) 78.72(n)
    75.39(a)
    25460  NM_012964.2  NP_037096.2 
    mouse
    (Mus musculus)
    Hmmr1, 5 11 (19.00 cM)5
    hyaluronan mediated motility receptor (RHAMM)1, 5 70.29(n)1
    63.84(a)1
    153661  NM_013552.11  NP_038580.11 
     AF0319325  AF0792225  (see all 20)
    About this table        Species with no ortholog for HMMR

    ENSEMBL Gene Tree for HMMR
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/132 NCBI SNPs in HMMR are shown (see all 132 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 92)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 5 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs2992951,2
    A,C,F,H,O162842294(+) AAAAGC/TGGCCA 4 A/V mis1 ese316Minor allele frequency- N:0.00NA EA MN EU WA 1478
    rs68908051,2
    A,C,F,H162850757(+) TCTGAG/AAAACC 4 -- ut31 ese37Minor allele frequency- A:0.05EU EA WA NA 562
    rs23030781,2
    C,F,H,O162833734(+) GGAACG/ATGAAA 4 H/R mis112Minor allele frequency- A:0.04NA EU EA WA 1056
    rs2992841,2
    C,F,H,O162829228(+) AGATTC/TGTGTT 4 R/C mis114Minor allele frequency- T:0.12EU EA WA NA 1122
    rs22303631,2
    C,F,H162843653(+) TTCAGC/ATACAA 4 I/L mis113Minor allele frequency- A:0.03MN NA EU EA WA 1086
    rs2992901,2
    C,F,H162835094(+) AATGGC/TTAAAG 4 V/A mis1 ese319Minor allele frequency- N:0.00MN EA NA EU WA 2834
    rs22303621,2
    C,F,H162842743(+) TGGAAG/CATGAA 4 H/D mis19Minor allele frequency- C:0.01MN EU EA WA 886
    rs23030771,2
    C,F,H162833699(+) CAAAAC/GTTAAA 4 N/K mis18Minor allele frequency- G:0.02EU EA WA 804
    rs119606951,2
    F,H162851844(+) AGAAAC/TGTAGA 2 -- ng314Minor allele frequency- T:0.16EU EA WA 416
    rs176009381,2
    C,F,H162842265(+) CTTAAG/ACTGGA 4 K/K syn17Minor allele frequency- A:0.10NA EU EA WA 562
    About this table

    HapMap Linkage Disequilibrium images for HMMR (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 600936   disorders: 114480  

    10/15 Novoseek disease relationships for HMMR gene (see all 15 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    fibrosarcoma 37.89 2 8750188 (1), 7541721 (1)
    leukemia hairy cell 37.18 4 7678518 (2), 7529076 (1)
    metastasis 29.36 14 9533523 (3), 18174258 (2), 11029494 (1), 12469144 (1) (see all 9)
    myeloma 29.06 2 15705883 (1), 7529076 (1)
    myxoma 27.63 2 1710472 (1), 2035257 (1)
    tumors 24.27 28 11029494 (4), 18971636 (2), 9533523 (2), 11716065 (1) (see all 17)
    cancer 13.24 13 18174258 (2), 11029494 (1), 12469144 (1), 15705883 (1) (see all 9)
    breast carcinoma 10.65 3 8750188 (1), 9601098 (1), 9533523 (1)
    primary tumor 5.98 3 9533523 (3)
    breast cancer 5.57 15 9533523 (4), 17392272 (3), 19064580 (2), 9601098 (1)
    About this table

    Human Genome Epidemiology Navigator: HMMR (1 document)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/129 PubMed articles for HMMR gene (see all 129 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 3161 HGNC: 5012 AceView: HMMR Ensembl:ENSG00000072571 euGenes: HUgn3161
    ECgene: HMMR H-InvDB: HMMR
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for HMMR Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for HMMR:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for HMMR Browse antibodies at Sigma-Aldrich
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for HMMR Browse small molecules at Sigma-Aldrich
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