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Aliases for HMMR Gene

Aliases for HMMR Gene

  • Hyaluronan-Mediated Motility Receptor (RHAMM) 2 3
  • Intracellular Hyaluronic Acid-Binding Protein 3 4
  • Receptor For Hyaluronan-Mediated Motility 3 4
  • IHABP 3 4
  • RHAMM 3 4
  • Hyaluronan Mediated Motility Receptor 3
  • CD168 Antigen 4
  • CD168 3

External Ids for HMMR Gene

Summaries for HMMR Gene

Entrez Gene Summary for HMMR Gene

  • The protein encoded by this gene is involved in cell motility. It is expressed in breast tissue and together with other proteins, it forms a complex with BRCA1 and BRCA2, thus is potentially associated with higher risk of breast cancer. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Dec 2008]

GeneCards Summary for HMMR Gene

HMMR (Hyaluronan-Mediated Motility Receptor (RHAMM)) is a Protein Coding gene. Diseases associated with HMMR include breast cancer and chronic graft versus host disease. Among its related pathways are Disease and Apoptotic Pathways in Synovial Fibroblasts. GO annotations related to this gene include hyaluronic acid binding.

UniProtKB/Swiss-Prot for HMMR Gene

  • Involved in cell motility. When hyaluronan binds to HMMR, the phosphorylation of a number of proteins, including PTK2/FAK1 occurs. May also be involved in cellular transformation and metastasis formation, and in regulating extracellular-regulated kinase (ERK) activity

Gene Wiki entry for HMMR Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMMR Gene

Genomics for HMMR Gene

Genomic Location for HMMR Gene

Start:
163,460,203 bp from pter
End:
163,491,945 bp from pter
Size:
31,743 bases
Orientation:
Plus strand

Genomic View for HMMR Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HMMR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMMR Gene

Regulatory Elements for HMMR Gene

Proteins for HMMR Gene

  • Protein details for HMMR Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75330-HMMR_HUMAN
    Recommended name:
    Hyaluronan mediated motility receptor
    Protein Accession:
    O75330
    Secondary Accessions:
    • A8K3G2
    • B4E114
    • D3DQK9
    • D3DQL0
    • E9PCS0
    • Q32N02
    • Q92767

    Protein attributes for HMMR Gene

    Size:
    724 amino acids
    Molecular mass:
    84100 Da
    Quaternary structure:
    • Subunit of the HARC complex

    Alternative splice isoforms for HMMR Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HMMR Gene

Proteomics data for HMMR Gene at MOPED

Post-translational modifications for HMMR Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HMMR Gene

No data available for DME Specific Peptides for HMMR Gene

Domains for HMMR Gene

Gene Families for HMMR Gene

HGNC:
  • CD :CD molecules

Protein Domains for HMMR Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with HMMR: view

No data available for UniProtKB/Swiss-Prot for HMMR Gene

Function for HMMR Gene

Molecular function for HMMR Gene

GENATLAS Biochemistry: hyaluronan-mediated motility receptor,involved in signal transduction via Src tyrosine kinase family,expressed in the cytoplasm,nucleus,and cell surface,five isoforms (58,60,64,70,84kDa),regulating cell motility and cell cycle
UniProtKB/Swiss-Prot Function: Involved in cell motility. When hyaluronan binds to HMMR, the phosphorylation of a number of proteins, including PTK2/FAK1 occurs. May also be involved in cellular transformation and metastasis formation, and in regulating extracellular-regulated kinase (ERK) activity

Gene Ontology (GO) - Molecular Function for HMMR Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0005540 hyaluronic acid binding IEA --
genes like me logo Genes that share ontologies with HMMR: view

Phenotypes for HMMR Gene

genes like me logo Genes that share phenotypes with HMMR: view

Animal Models for HMMR Gene

MGI Knock Outs for HMMR:

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for HMMR Gene

Localization for HMMR Gene

Subcellular locations from UniProtKB/Swiss-Prot for HMMR Gene

Cell surface. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HMMR Gene COMPARTMENTS Subcellular localization image for HMMR gene
Compartment Confidence
plasma membrane 4
cytoskeleton 2
cytosol 2
nucleus 2
extracellular 1
golgi apparatus 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for HMMR Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane TAS --
GO:0009986 cell surface IEA --
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with HMMR: view

Pathways for HMMR Gene

genes like me logo Genes that share pathways with HMMR: view

Pathways by source for HMMR Gene

Gene Ontology (GO) - Biological Process for HMMR Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process TAS --
GO:0030203 glycosaminoglycan metabolic process TAS --
GO:0030212 hyaluronan metabolic process TAS --
GO:0030214 hyaluronan catabolic process TAS --
GO:0044281 small molecule metabolic process TAS --
genes like me logo Genes that share ontologies with HMMR: view

Compounds for HMMR Gene

(2) HMDB Compounds for HMMR Gene

Compound Synonyms Cas Number PubMed IDs
Hyaluronan
  • hyaluronic acid
9004-61-9
Hyaluronic acid
  • hyaluronic acid
9004-61-9

(5) Novoseek inferred chemical compound relationships for HMMR Gene

Compound -log(P) Hits PubMed IDs
hyaluronic acid 84.9 48
chondroitin sulfate 20 1
tyrosine 7.53 4
pge2 0 1
heparin 0 8
genes like me logo Genes that share compounds with HMMR: view

Transcripts for HMMR Gene

Unigene Clusters for HMMR Gene

Hyaluronan-mediated motility receptor (RHAMM):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HMMR Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18a · 18b ^ 19
SP1: -
SP2: -
SP3: - -
SP4: - - - -
SP5:
SP6:

Relevant External Links for HMMR Gene

GeneLoc Exon Structure for
HMMR
ECgene alternative splicing isoforms for
HMMR

Expression for HMMR Gene

mRNA expression in normal human tissues for HMMR Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HMMR Gene

This gene is overexpressed in Testis (6.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for HMMR Gene

SOURCE GeneReport for Unigene cluster for HMMR Gene Hs.740467

mRNA Expression by UniProt/SwissProt for HMMR Gene

O75330-HMMR_HUMAN
Tissue specificity: Expressed in breast cancer cell lines and in normal breast tissue
genes like me logo Genes that share expressions with HMMR: view

Orthologs for HMMR Gene

This gene was present in the common ancestor of chordates.

Orthologs for HMMR Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HMMR 36
  • 99.22 (n)
  • 98.62 (a)
HMMR 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HMMR 36
  • 88.08 (n)
  • 83.87 (a)
HMMR 37
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HMMR 36
  • 88.18 (n)
  • 86.57 (a)
HMMR 37
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hmmr 36
  • 74.52 (n)
  • 71.51 (a)
Hmmr 16
Hmmr 37
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HMMR 37
  • 62 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 44 (a)
OneToMany
-- 37
  • 52 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Hmmr 36
  • 78.75 (n)
  • 75.42 (a)
chicken
(Gallus gallus)
Aves HMMR 36
  • 62.28 (n)
  • 52.12 (a)
lizard
(Anolis carolinensis)
Reptilia HMMR 37
  • 46 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.22720 36
tropical clawed frog
(Silurana tropicalis)
Amphibia hmmr 36
  • 56.18 (n)
  • 48 (a)
zebrafish
(Danio rerio)
Actinopterygii hmmr 36
  • 50.9 (n)
  • 45.12 (a)
hmmr 37
  • 28 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10432 37
  • 21 (a)
OneToOne
Species with no ortholog for HMMR:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HMMR Gene

ENSEMBL:
Gene Tree for HMMR (if available)
TreeFam:
Gene Tree for HMMR (if available)

Paralogs for HMMR Gene

No data available for Paralogs for HMMR Gene

Variants for HMMR Gene

Sequence variations from dbSNP and Humsavar for HMMR Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs169920 -- 163,471,559(+) CTTCT(C/G)TTAGT intron-variant
rs192733 -- 163,465,912(+) gccaa(A/G)gtggt intron-variant
rs213504 -- 163,472,321(+) gttca(C/T)cttat intron-variant
rs299281 -- 163,472,054(+) TAttt(A/T)ttttt intron-variant
rs299282 -- 163,472,011(+) tcatc(A/G)taaat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HMMR Gene

Variant ID Type Subtype PubMed ID
nsv830538 CNV Gain+Loss 17160897
nsv519801 CNV Loss 19592680
nsv524084 CNV Loss 19592680

Relevant External Links for HMMR Gene

HapMap Linkage Disequilibrium report
HMMR

Disorders for HMMR Gene

(1) OMIM Diseases for HMMR Gene (600936)

(16) Novoseek inferred disease relationships for HMMR Gene

Disease -log(P) Hits PubMed IDs
fibrosarcoma 36 2
leukemia hairy cell 35.4 3
metastasis 28.6 13
tumors 28.1 23
myeloma 27 2

Relevant External Links for HMMR

Genetic Association Database (GAD)
HMMR
Human Genome Epidemiology (HuGE) Navigator
HMMR
genes like me logo Genes that share disorders with HMMR: view

No data available for UniProtKB/Swiss-Prot for HMMR Gene

Publications for HMMR Gene

  1. The human hyaluronan receptor RHAMM is expressed as an intracellular protein in breast cancer cells. (PMID: 9601098) Assmann V. … Hart I.R. (J. Cell Sci. 1998) 3 4 23
  2. Hyaluronan-mediated motility receptor gene single nucleotide polymorphisms and risk of breast cancer. (PMID: 19064580) Kalmyrzaev B. … Dunning A.M. (Cancer Epidemiol. Biomarkers Prev. 2008) 3 23 49
  3. The candidate immunotherapeutical target, the receptor for hyaluronic acid-mediated motility, is associated with proliferation and shows prognostic value in B-cell chronic lymphocytic leukemia. (PMID: 19092852) Giannopoulos K. … Schmitt M. (Leukemia 2009) 3 23
  4. The tumor antigens RHAMM and G250/CAIX are expressed in head and neck squamous cell carcinomas and elicit specific CD8+ T cell responses. (PMID: 19212667) Schmitt A. … Schmitt M. (Int. J. Oncol. 2009) 3 23
  5. Overexpression of the receptor for hyaluronan-mediated motility, correlates with expression of microtubule-associated protein in human oral squamous cell carcinomas. (PMID: 19424574) Shigeishi H. … Kamata N. (Int. J. Oncol. 2009) 3 23

Products for HMMR Gene

Sources for HMMR Gene

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