Aliases for HMHB1 Gene
Aliases for HMHB1 Gene
External Ids for HMHB1 Gene
- HGNC: 29677
- Entrez Gene: 57824
- Ensembl: ENSG00000158497
- OMIM: 609961
- UniProtKB: O97980
Previous GeneCards Identifiers for HMHB1 Gene
- GC05P143172
- GC05P138338
Summaries for HMHB1 Gene
-
This gene encodes one of the minor histocompatibility antigens, which play an important role in the induction of cytotoxic T lymphocyte (CTL) reactivity against leukemia after human histocompatibility leukocyte antigen (HLA)-identical allogeneic bone marrow transplantation (BMT). This gene is only expressed in B cell acute lymphoblastic leukemia cells and Epstein-Barr virus-transformed B cells. The translation of this mRNA initiates at a non-AUG (CUG) codon. [provided by RefSeq, Jul 2008]
GeneCards Summary for HMHB1 Gene
HMHB1 (Histocompatibility Minor HB-1) is a Protein Coding gene. Diseases associated with HMHB1 include Lymphoblastic Leukemia.
UniProtKB/Swiss-Prot for HMHB1 Gene
-
Precursor of the histocomplatibility antigen HB-1. More generally, minor histocomplatibility antigens (mHags) refer to immunogenic peptide which, when complexed with MHC, can generate an immune response after recognition by specific T-cells. The peptides are derived from polymorphic intracellular proteins, which are cleaved by normal pathways of antigen processing. The binding of these peptides to MHC class I or class II molecules and its expression on the cell surface can stimulate T-cell responses and thereby trigger graft rejection or graft-versus-host disease (GVHD) after hematopoietic stem cell transplantation from HLA-identical sibling donor. GVHD is a frequent complication after bone marrow transplantation (BMT), due to mismatch of minor histocomplatibility antigen in HLA-matched sibling marrow transplants. HB-1 is presented on the cell surface by MHC class I HLA-B44. This complex specifically elicits donor-cytotoxic T lymphocyte (CTL) reactivity in B-cell acute lymphoblastic leukemia (B-ALL) after treatment by HLA-identical allogenic bone marrow transplantation (BMT). It induces cell recognition and lysis by CTL. However, HB-1 restricted expression in B-ALL cells and not in normal tissues may allow a specific CTL reactivity against B-ALL without the risk of evoking graft-versus-host disease.
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMHB1 Gene
Genomics for HMHB1 Gene
Regulatory Elements for HMHB1 Gene
Enhancers for HMHB1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH05G143836 | 0.8 | ENCODE | 11.3 | +25.4 | 25412 | 1.7 | CTCF SOX13 PKNOX1 FOXA2 CEBPG ZIC2 ZBTB40 RAD21 RARA EED | HMHB1 NR3C1 GC05P144011 PIR62690 GC05P144013 GC05P144012 |
| GH05G143757 | 0.8 | ENCODE | 11 | -53.7 | -53734 | 2.8 | PKNOX1 TBL1XR1 JUN FOSL1 EED NR2F6 RELB ETV6 IKZF2 CREM | HMHB1 GC05M143659 |
| GH05G143712 | 0.6 | ENCODE | 10.8 | -98.9 | -98906 | 1.5 | HDGF ZNF366 ZNF512 CEBPB YBX1 CEBPG PRDM1 | HMHB1 MIR5197 LOC100420513 |
| GH05G143806 | 0.8 | FANTOM5 | 3.4 | -5.4 | -5406 | 0.2 | TBP EBF1 RELA EED RELB IKZF2 CREM MTA2 NR2F1 ZBED1 | NR3C1 HMHB1 GC05M143659 |
| GH05G143812 | 0.8 | Ensembl | 0.7 | +0.2 | 240 | 0.8 | HDGF HINFP ZNF175 PYGO2 FOSL1 POLR2A EED RELB IKZF2 CREM | HMHB1 GC05P144011 GC05P144012 GC05P144013 PIR62690 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMHB1 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the HMHB1 gene promoter:
Regulatory Element Products
Genomic Location for HMHB1 Gene
- Chromosome:
- 5
- Start:
- 143,812,161 bp from pter
- End:
- 143,820,719 bp from pter
- Size:
- 8,559 bases
- Orientation:
- Plus strand
Genomic View for HMHB1 Gene
Genes around HMHB1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q31.3 by Ensembl
- 5q31.3 by Entrez Gene
- 5q31.3 by HGNC
HMHB1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMHB1 Gene
Proteins for HMHB1 Gene
-
Protein details for HMHB1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O97980-HMHB1_HUMAN
- Recommended name:
- Minor histocompatibility protein HB-1
- Protein Accession:
- O97980
- Q9MY25
Protein attributes for HMHB1 Gene
- Size:
- 41 amino acids
- Molecular mass:
- 4965 Da
- Quaternary structure:
-
- HB-1 forms a complex with MHC class I HLA-B44.
Post-translational modifications for HMHB1 Gene
Other Protein References for HMHB1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Search GeneTex for Antibodies for HMHB1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMHB1
- Origene Custom Protein Services for HMHB1
- Search GeneTex for Proteins for HMHB1
Assay Products
No data available for DME Specific Peptides for HMHB1 Gene
Domains & Families for HMHB1 Gene
Gene Families for HMHB1 Gene
Protein Domains for HMHB1 Gene
- ProtoNet:
Suggested Antigen Peptide Sequences for HMHB1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for HMHB1 Gene
Function for HMHB1 Gene
Molecular function for HMHB1 Gene
- UniProtKB/Swiss-Prot Function:
- Precursor of the histocomplatibility antigen HB-1. More generally, minor histocomplatibility antigens (mHags) refer to immunogenic peptide which, when complexed with MHC, can generate an immune response after recognition by specific T-cells. The peptides are derived from polymorphic intracellular proteins, which are cleaved by normal pathways of antigen processing. The binding of these peptides to MHC class I or class II molecules and its expression on the cell surface can stimulate T-cell responses and thereby trigger graft rejection or graft-versus-host disease (GVHD) after hematopoietic stem cell transplantation from HLA-identical sibling donor. GVHD is a frequent complication after bone marrow transplantation (BMT), due to mismatch of minor histocomplatibility antigen in HLA-matched sibling marrow transplants. HB-1 is presented on the cell surface by MHC class I HLA-B44. This complex specifically elicits donor-cytotoxic T lymphocyte (CTL) reactivity in B-cell acute lymphoblastic leukemia (B-ALL) after treatment by HLA-identical allogenic bone marrow transplantation (BMT). It induces cell recognition and lysis by CTL. However, HB-1 restricted expression in B-ALL cells and not in normal tissues may allow a specific CTL reactivity against B-ALL without the risk of evoking graft-versus-host disease.
Phenotypes for HMHB1 Gene
- GenomeRNAi human phenotypes for HMHB1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for HMHB1 gene
- Search ViGene Biosciences for HMHB1
miRNA Products
- Search ViGene Biosciences for HMHB1
Inhibitory RNA Products
- Origene RNAi, shRNA, and siRNA products in human, mouse, rat for HMHB1
- Browse OriGene Inhibitory RNA Products For HMHB1
- Search ViGene Biosciences for HMHB1
Clone Products
-
OriGene ORF clones in human for HMHB1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Cell Line Products
-
Horizon Cell Lines for HMHB1
-
ViGene Biosciences adenoviral particle packaged cDNA for HMHB1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for HMHB1 gene
- Search ViGene Biosciences for HMHB1
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMHB1 Gene
Localization for HMHB1 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 2 |
| nucleus | 2 |
| cytosol | 2 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for HMHB1 Gene
Pathways & Interactions for HMHB1 Gene
No Data Available
Interacting Proteins for HMHB1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0002250 | adaptive immune response | IEA | -- |
| GO:0002376 | immune system process | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for HMHB1 Gene
Transcripts for HMHB1 Gene
mRNA/cDNA for HMHB1 Gene
- (1) REFSEQ mRNAs :
- (8) Additional mRNA sequences :
- (3) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for HMHB1 Gene
miRNA Products
- Search ViGene Biosciences for HMHB1
Inhibitory RNA Products
- Origene RNAi, shRNA, and siRNA products in human, mouse, rat for HMHB1
- Browse OriGene Inhibitory RNA Products For HMHB1
- Search ViGene Biosciences for HMHB1
Clone Products
-
OriGene ORF clones in human for HMHB1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Flow Cytometry Products
Expression for HMHB1 Gene
mRNA differential expression in normal tissues according to GTEx for HMHB1 Gene
This gene is overexpressed in Testis (x10.9).
NURSA nuclear receptor signaling pathways regulating expression of HMHB1 Gene:
HMHB1SOURCE GeneReport for Unigene cluster for HMHB1 Gene:
Hs.158320mRNA Expression by UniProt/SwissProt for HMHB1 Gene:
O97980-HMHB1_HUMAN
Tissue specificity:
Expressed in acute lymphoblastic leukemia B-cells and Epstein-Barr virus-transformed B-cells.
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMHB1 Gene
Orthologs for HMHB1 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HMHB1 35 |
|
OneToOne |
- Species where no ortholog for HMHB1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for HMHB1 Gene
No data available for Paralogs for HMHB1 Gene
Variants for HMHB1 Gene
| SNP ID | Clin | Chr 05 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000000116 | -- | 143,820,965(+) | GTGGA(C/G)AGTAA | downstream-variant-500B | |
| rs1000074044 | -- | 143,820,080(+) | ATTTT(A/G)TTTCT | intron-variant | |
| rs1000292330 | -- | 143,813,978(+) | TATTT(A/G)TGATT | intron-variant | |
| rs1000541299 | -- | 143,820,722(+) | GAACA(-/TG)TGTGT | downstream-variant-500B | |
| rs1000980595 | -- | 143,818,982(+) | ATCAC(C/T)TGAAC | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3566747 | CNV | deletion | 23714750 |
Residual Variation Intolerance Score:
76.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
5.23;
70.04% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for HMHB1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMHB1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HMHB1 Gene
Disorders for HMHB1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| lymphoblastic leukemia |
|
|
Search HMHB1 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for HMHB1
No data available for UniProtKB/Swiss-Prot and Genatlas for HMHB1 Gene
Publications for HMHB1 Gene
- A human minor histocompatibility antigen specific for B cell acute lymphoblastic leukemia. (PMID: 9892612) Dolstra H. … van de Wiel-van Kemenade E. (J. Exp. Med. 1999) 2 3 4 22 64
- Role of minor histocompatibility antigens in renal transplantation. (PMID: 18093280) Heinold A. … Tran T.H. (Am. J. Transplant. 2008) 3 22 46 64
- Degree of predicted minor histocompatibility antigen mismatch correlates with poorer clinical outcomes in nonmyeloablative allogeneic hematopoietic cell transplantation. (PMID: 20353833) Larsen M.E. … Vindelov L. (Biol. Blood Marrow Transplant. 2010) 3 46 64
- Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 46 64
- Improved genotyping of the human minor histocompatibility antigen HB-1 by polymerase chain reaction with sequence-specific primers using a complementary oligonucleotide. (PMID: 20718936) Park M.J. … Kim T.G. (Tissue Antigens 2010) 3 64
Products for HMHB1 Gene
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- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMHB1
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- Novus Biologicals
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- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- ViGene Biosciences adenoviral particle packaged cDNA for HMHB1 gene
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- Search ViGene Biosciences for HMHB1
- Horizon Cell Lines for HMHB1
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMHB1
- VectorBuilder custom plasmid, inducible vectors for HMHB1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMHB1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMHB1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
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- (15) Blocks
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- (28) RNAdb
- (29) ASD
- (30) ECgene
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- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
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- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
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- (48) BGMUT
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- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
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- (59) MILLIPORE
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- (62) NCBI
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- (64) PubMed
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- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
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- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
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