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Aliases for HMGXB3 Gene

Aliases for HMGXB3 Gene

  • HMG Box Domain Containing 3 2 3
  • SMF 3 4
  • HMG Domain-Containing Protein 3 3
  • HMG Box-Containing Protein 3 4
  • Protein SMF 4
  • KIAA0194 4
  • HMGX3 3

External Ids for HMGXB3 Gene

Previous Symbols for HMGXB3 Gene

  • HMGX3

Summaries for HMGXB3 Gene

Entrez Gene Summary for HMGXB3 Gene

  • This gene is one of the non-canonical high mobility group (HMG) genes. The encoded protein contains an HMG-box domain found in DNA binding proteins such as transcription factors and chromosomal proteins. [provided by RefSeq, Aug 2011]

GeneCards Summary for HMGXB3 Gene

HMGXB3 (HMG Box Domain Containing 3) is a Protein Coding gene. GO annotations related to this gene include kinase activity.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGXB3 Gene

Genomics for HMGXB3 Gene

Genomic Location for HMGXB3 Gene

Start:
150,000,046 bp from pter
End:
150,053,143 bp from pter
Size:
53,098 bases
Orientation:
Plus strand

Genomic View for HMGXB3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HMGXB3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGXB3 Gene

Regulatory Elements for HMGXB3 Gene

Proteins for HMGXB3 Gene

  • Protein details for HMGXB3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12766-HMGX3_HUMAN
    Recommended name:
    HMG domain-containing protein 3
    Protein Accession:
    Q12766
    Secondary Accessions:
    • G5E9Y4
    • Q86UG3
    • Q9UMF4

    Protein attributes for HMGXB3 Gene

    Size:
    1538 amino acids
    Molecular mass:
    168334 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HMGXB3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HMGXB3 Gene

Proteomics data for HMGXB3 Gene at MOPED

Post-translational modifications for HMGXB3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HMGXB3 Gene

No data available for DME Specific Peptides for HMGXB3 Gene

Domains for HMGXB3 Gene

Gene Families for HMGXB3 Gene

HGNC:
  • HMGX :High mobility group / Non-canonical

Protein Domains for HMGXB3 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

HMGX3_HUMAN
Domain:
  • Contains 1 HMG box DNA-binding domain.:
    • Q12766
genes like me logo Genes that share domains with HMGXB3: view

Function for HMGXB3 Gene

Gene Ontology (GO) - Molecular Function for HMGXB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0016301 kinase activity NAS 9027509
genes like me logo Genes that share ontologies with HMGXB3: view

miRNA for HMGXB3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for HMGXB3 Gene

Localization for HMGXB3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HMGXB3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HMGXB3 Gene COMPARTMENTS Subcellular localization image for HMGXB3 gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for HMGXB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with HMGXB3: view

Pathways for HMGXB3 Gene

SuperPathways for HMGXB3 Gene

No Data Available

Interacting Proteins for HMGXB3 Gene

Gene Ontology (GO) - Biological Process for HMGXB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0016310 phosphorylation NAS 9027509
genes like me logo Genes that share ontologies with HMGXB3: view

No data available for Pathways by source for HMGXB3 Gene

Transcripts for HMGXB3 Gene

mRNA/cDNA for HMGXB3 Gene

(3) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HMGXB3 Gene

HMG box domain containing 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HMGXB3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19a · 19b ^
SP1: - - -
SP2: - - - - -
SP3: - - -
SP4:
SP5:

ExUns: 20
SP1:
SP2:
SP3:
SP4:
SP5:

Relevant External Links for HMGXB3 Gene

GeneLoc Exon Structure for
HMGXB3
ECgene alternative splicing isoforms for
HMGXB3

Expression for HMGXB3 Gene

mRNA expression in normal human tissues for HMGXB3 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for HMGXB3 Gene

SOURCE GeneReport for Unigene cluster for HMGXB3 Gene Hs.719189

genes like me logo Genes that share expressions with HMGXB3: view

Orthologs for HMGXB3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HMGXB3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HMGXB3 36
  • 99.74 (n)
  • 99.69 (a)
HMGXB3 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HMGXB3 36
  • 91.48 (n)
  • 92.92 (a)
HMGXB3 37
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HMGXB3 36
  • 91.41 (n)
  • 93.1 (a)
HMGXB3 37
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hmgxb3 36
  • 87.73 (n)
  • 89.36 (a)
Hmgxb3 16
Hmgxb3 37
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HMGXB3 37
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-1413 37
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves HMGXB3 36
  • 71.68 (n)
  • 72.83 (a)
HMGXB3 37
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HMGXB3 37
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hmgxb3 36
  • 63.73 (n)
  • 61.61 (a)
zebrafish
(Danio rerio)
Actinopterygii HMGXB3 37
  • 44 (a)
OneToOne
LOC101886434 36
  • 54.82 (n)
  • 47.97 (a)
Species with no ortholog for HMGXB3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HMGXB3 Gene

ENSEMBL:
Gene Tree for HMGXB3 (if available)
TreeFam:
Gene Tree for HMGXB3 (if available)

Paralogs for HMGXB3 Gene

No data available for Paralogs for HMGXB3 Gene

Variants for HMGXB3 Gene

Sequence variations from dbSNP and Humsavar for HMGXB3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs216125 -- 150,048,832(+) ACCCC(C/G/T)TGGGC intron-variant
rs216126 -- 150,048,861(+) CTTCT(C/G)TCAGT intron-variant
rs216127 -- 150,049,327(+) AGGGT(A/G)TGGAC intron-variant
rs216128 -- 150,049,646(+) CAGCA(C/T)GGGGA intron-variant
rs216129 -- 150,051,094(+) GGGGA(A/T)GCTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HMGXB3 Gene

Variant ID Type Subtype PubMed ID
esv24664 CNV Gain+Loss 19812545
nsv830518 CNV Loss 17160897

Relevant External Links for HMGXB3 Gene

HapMap Linkage Disequilibrium report
HMGXB3

Disorders for HMGXB3 Gene

Relevant External Links for HMGXB3

Genetic Association Database (GAD)
HMGXB3
genes like me logo Genes that share disorders with HMGXB3: view

No data available for UniProtKB/Swiss-Prot for HMGXB3 Gene

Publications for HMGXB3 Gene

  1. Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1. (PMID: 8724849) Nagase T. … Nomura N. (DNA Res. 1996) 2 3 4
  2. Sequence analysis of two genomic regions containing the KIT and the FMS receptor tyrosine kinase genes. (PMID: 9027509) Andre C. … Galibert F. (Genomics 1997) 3 4
  3. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J. … Goldstein D.B. (PLoS Genet. 2009) 3 49
  4. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A. … Wanker E.E. (Sci Signal 2011) 3
  5. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for HMGXB3 Gene

Sources for HMGXB3 Gene

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