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Aliases for HMGN4 Gene

Aliases for HMGN4 Gene

  • High Mobility Group Nucleosomal Binding Domain 4 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 17-Like 3 2 3
  • Non-Histone Chromosomal Protein HMG-17-Like 3 3 4
  • HMG17L3 3 4
  • NHC 3 4
  • High-Mobility Group Protein 17-Like 3 3
  • Non-Histone Chromosomal Protein 4
  • High Mobility Group Protein N4 3

External Ids for HMGN4 Gene

Previous HGNC Symbols for HMGN4 Gene

  • HMG17L3

Previous GeneCards Identifiers for HMGN4 Gene

  • GC06P026602
  • GC06P026646
  • GC06P026481

Summaries for HMGN4 Gene

Entrez Gene Summary for HMGN4 Gene

  • The protein encoded by this gene, a member of the HMGN protein family, is thought to reduce the compactness of the chromatin fiber in nucleosomes, thereby enhancing transcription from chromatin templates. [provided by RefSeq, Mar 2013]

GeneCards Summary for HMGN4 Gene

HMGN4 (High Mobility Group Nucleosomal Binding Domain 4) is a Protein Coding gene. GO annotations related to this gene include nucleosomal DNA binding. An important paralog of this gene is HMGN2.

Gene Wiki entry for HMGN4 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN4 Gene

Genomics for HMGN4 Gene

Regulatory Elements for HMGN4 Gene

Enhancers for HMGN4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HMGN4 on UCSC Golden Path with GeneCards custom track

Promoters for HMGN4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HMGN4 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN4 Gene

Chromosome:
6
Start:
26,538,344 bp from pter
End:
26,546,937 bp from pter
Size:
8,594 bases
Orientation:
Plus strand

Genomic View for HMGN4 Gene

Genes around HMGN4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN4 Gene

Proteins for HMGN4 Gene

  • Protein details for HMGN4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00479-HMGN4_HUMAN
    Recommended name:
    High mobility group nucleosome-binding domain-containing protein 4
    Protein Accession:
    O00479
    Secondary Accessions:
    • B2R4I6
    • Q53XL9

    Protein attributes for HMGN4 Gene

    Size:
    90 amino acids
    Molecular mass:
    9539 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HMGN4 Gene

Proteomics data for HMGN4 Gene at MOPED

Post-translational modifications for HMGN4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HMGN4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HMGN4 Gene

Domains & Families for HMGN4 Gene

Gene Families for HMGN4 Gene

Protein Domains for HMGN4 Gene

Suggested Antigen Peptide Sequences for HMGN4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O00479

UniProtKB/Swiss-Prot:

HMGN4_HUMAN :
  • Belongs to the HMGN family.
Family:
  • Belongs to the HMGN family.
genes like me logo Genes that share domains with HMGN4: view

Function for HMGN4 Gene

Gene Ontology (GO) - Molecular Function for HMGN4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031492 nucleosomal DNA binding IEA --
genes like me logo Genes that share ontologies with HMGN4: view
genes like me logo Genes that share phenotypes with HMGN4: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HMGN4 Gene

Localization for HMGN4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HMGN4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HMGN4 Gene COMPARTMENTS Subcellular localization image for HMGN4 gene
Compartment Confidence
nucleus 5

No data available for Gene Ontology (GO) - Cellular Components for HMGN4 Gene

Pathways & Interactions for HMGN4 Gene

SuperPathways for HMGN4 Gene

No Data Available

Interacting Proteins for HMGN4 Gene

Selected Interacting proteins: O00479-HMGN4_HUMAN for HMGN4 Gene via I2D UniProtKB

Gene Ontology (GO) - Biological Process for HMGN4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN4 Gene

Drugs & Compounds for HMGN4 Gene

No Compound Related Data Available

Transcripts for HMGN4 Gene

mRNA/cDNA for HMGN4 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(359) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HMGN4 Gene

High mobility group nucleosomal binding domain 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN4 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c · 5d · 5e
SP1: - -
SP2: - -
SP3: - - -
SP4: -
SP5: - - - -

Relevant External Links for HMGN4 Gene

GeneLoc Exon Structure for
HMGN4
ECgene alternative splicing isoforms for
HMGN4

Expression for HMGN4 Gene

mRNA expression in normal human tissues for HMGN4 Gene

Protein differential expression in normal tissues from HIPED for HMGN4 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (46.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for HMGN4 Gene



SOURCE GeneReport for Unigene cluster for HMGN4 Gene Hs.236774

genes like me logo Genes that share expression patterns with HMGN4: view

Protein tissue co-expression partners for HMGN4 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for HMGN4 Gene

Orthologs for HMGN4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HMGN4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia HMGN4 35
  • 91.48 (n)
  • 91.11 (a)
-- 36
  • 87 (a)
OneToMany
HMGN4 36
  • 91 (a)
OneToMany
dog
(Canis familiaris)
Mammalia LOC100856364 35
  • 88.52 (n)
  • 86.67 (a)
HMGN4 36
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HMGN4 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm10282 36
  • 86 (a)
OneToMany
Gm16494 36
  • 80 (a)
OneToMany
Hmgn2 36
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 72 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia HMGN4 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves HMGN2 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HMGN4 36
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hmgn2 35
  • 71.11 (n)
  • 73.33 (a)
Species with no ortholog for HMGN4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HMGN4 Gene

ENSEMBL:
Gene Tree for HMGN4 (if available)
TreeFam:
Gene Tree for HMGN4 (if available)

Paralogs for HMGN4 Gene

Paralogs for HMGN4 Gene

(1) SIMAP similar genes for HMGN4 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for HMGN4 Gene

genes like me logo Genes that share paralogs with HMGN4: view

Variants for HMGN4 Gene

Sequence variations from dbSNP and Humsavar for HMGN4 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1321481 -- 26,537,982(+) AAAAC(A/T)CGCAC upstream-variant-2KB
rs6913398 -- 26,540,365(+) GGTCT(G/T)GCTCT intron-variant
rs6913550 -- 26,540,455(+) TCAGC(C/T)TCCCA intron-variant
rs1804835 -- 26,546,266(+) CTTTC(A/C)TACCC utr-variant-3-prime
rs10456047 -- 26,537,585(+) GGGTC(A/G)TTTTA upstream-variant-2KB

Variation tolerance for HMGN4 Gene

Residual Variation Intolerance Score: 71.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.41; 42.59% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HMGN4 Gene

HapMap Linkage Disequilibrium report
HMGN4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HMGN4 Gene

Disorders for HMGN4 Gene

Relevant External Links for HMGN4

Genetic Association Database (GAD)
HMGN4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMGN4

No disorders were found for HMGN4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGN4 Gene

Publications for HMGN4 Gene

  1. A 1.1-Mb transcript map of the hereditary hemochromatosis locus. (PMID: 9149941) Ruddy D.A. … Feder J.N. (Genome Res. 1997) 2 3 4 67
  2. HMGN4, a newly discovered nucleosome-binding protein encoded by an intronless gene. (PMID: 11410162) Birger Y. … Bustin M. (DNA Cell Biol. 2001) 2 3 23
  3. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3
  4. Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PMID: 21044950) Lee O.H. … Songyang Z. (Mol. Cell Proteomics 2011) 3
  5. An atlas of combinatorial transcriptional regulation in mouse and man. (PMID: 20211142) Ravasi T. … Hayashizaki Y. (Cell 2010) 3

Products for HMGN4 Gene

Sources for HMGN4 Gene

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