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Aliases for HMGN3-AS1 Gene

Subcategory (RNA class) for HMGN3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HMGN3-AS1 Gene

  • HMGN3 Antisense RNA 1 2 3 5

External Ids for HMGN3-AS1 Gene

Previous GeneCards Identifiers for HMGN3-AS1 Gene

  • GC06P079944

Summaries for HMGN3-AS1 Gene

GeneCards Summary for HMGN3-AS1 Gene

HMGN3-AS1 (HMGN3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HMGN3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN3-AS1 Gene

Genomics for HMGN3-AS1 Gene

GeneHancer (GH) Regulatory Elements for HMGN3-AS1 Gene

Promoters and enhancers for HMGN3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I079232 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 560.7 +0.5 464 2.5 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 HMGN3-AS1 HMGN3 PHIP
GH06I079419 Enhancer 1.1 Ensembl ENCODE 11.3 +187.6 187551 2.6 INSM2 FEZF1 BATF ZNF2 RFX5 ZNF213 ZNF366 ZSCAN5C SCRT2 ZNF350 ENSG00000231533 LOC100506851 PHIP IRAK1BP1 LCA5 HMGN3 HMGN3-AS1 GC06P079428
GH06I079256 Enhancer 0.7 ENCODE 5.7 +24.0 23969 1.4 FOXA2 JUN BACH1 PYGO2 ZNF644 IRF9 FOSL1 DIDO1 NFE2 ZNF639 PHIP HMGN3 IRAK1BP1 HMGN3-AS1 ENSG00000220154
GH06I079230 Enhancer 0.4 Ensembl ENCODE 0.8 -2.5 -2530 0.6 HMGN3 HMGN3-AS1 GC06M079194
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGN3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGN3-AS1 Gene

Genomic Locations for HMGN3-AS1 Gene
chr6:79,233,674-79,236,800
(GRCh38/hg38)
Size:
3,127 bases
Orientation:
Plus strand
chr6:79,943,391-79,946,517
(GRCh37/hg19)

Genomic View for HMGN3-AS1 Gene

Genes around HMGN3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN3-AS1 Gene

Proteins for HMGN3-AS1 Gene

Post-translational modifications for HMGN3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN3-AS1 Gene

Domains & Families for HMGN3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN3-AS1 Gene

Function for HMGN3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN3-AS1 Gene

Localization for HMGN3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN3-AS1 Gene

Pathways & Interactions for HMGN3-AS1 Gene

SuperPathways for HMGN3-AS1 Gene

No Data Available

Interacting Proteins for HMGN3-AS1 Gene

Gene Ontology (GO) - Biological Process for HMGN3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN3-AS1 Gene

Drugs & Compounds for HMGN3-AS1 Gene

No Compound Related Data Available

Transcripts for HMGN3-AS1 Gene

mRNA/cDNA for HMGN3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN3-AS1 Gene

No ASD Table

Relevant External Links for HMGN3-AS1 Gene

GeneLoc Exon Structure for
HMGN3-AS1
ECgene alternative splicing isoforms for
HMGN3-AS1

Expression for HMGN3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN3-AS1 Gene

genes like me logo Genes that share expression patterns with HMGN3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN3-AS1 Gene

Orthologs for HMGN3-AS1 Gene

Evolution for HMGN3-AS1 Gene

ENSEMBL:
Gene Tree for HMGN3-AS1 (if available)
TreeFam:
Gene Tree for HMGN3-AS1 (if available)

No data available for Orthologs for HMGN3-AS1 Gene

Paralogs for HMGN3-AS1 Gene

No data available for Paralogs for HMGN3-AS1 Gene

Variants for HMGN3-AS1 Gene

Sequence variations from dbSNP and Humsavar for HMGN3-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000714822 -- 79,236,953(+) C/T downstream_transcript_variant
rs1000983137 -- 79,235,121(+) G/A non_coding_transcript_variant
rs1001352028 -- 79,234,753(+) C/T non_coding_transcript_variant
rs1003268531 -- 79,235,138(+) G/A non_coding_transcript_variant
rs1003298389 -- 79,232,643(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HMGN3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830706 CNV gain 17160897

Additional Variant Information for HMGN3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMGN3-AS1 Gene

Disorders for HMGN3-AS1 Gene

Additional Disease Information for HMGN3-AS1

No disorders were found for HMGN3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGN3-AS1 Gene

Publications for HMGN3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for HMGN3-AS1 Gene

Sources for HMGN3-AS1 Gene

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