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Aliases for HMGN3-AS1 Gene

Subcategory (RNA class) for HMGN3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HMGN3-AS1 Gene

  • HMGN3 Antisense RNA 1 2 3 5

External Ids for HMGN3-AS1 Gene

Previous GeneCards Identifiers for HMGN3-AS1 Gene

  • GC06P079944

Summaries for HMGN3-AS1 Gene

GeneCards Summary for HMGN3-AS1 Gene

HMGN3-AS1 (HMGN3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN3-AS1 Gene

Genomics for HMGN3-AS1 Gene

Regulatory Elements for HMGN3-AS1 Gene

Enhancers for HMGN3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G079232 1.1 ENCODE 10.7 +0.5 464 2.5 HDGF PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 HMGN3-AS1 HMGN3
GH06G079256 0.8 ENCODE 5.7 +24.0 23969 1.4 ESRRA FOXA2 JUN BACH1 ZNF175 PYGO2 ZNF644 FOSL1 IRF9 DIDO1 HMGN3 HMGN3-AS1 ENSG00000220154
GH06G079230 0.5 Ensembl ENCODE 0.7 -2.5 -2531 0.6 HMGN3-AS1 GC06M079194
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HMGN3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for HMGN3-AS1 Gene

79,233,674 bp from pter
79,236,800 bp from pter
3,127 bases
Plus strand

Genomic View for HMGN3-AS1 Gene

Genes around HMGN3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN3-AS1 Gene

Proteins for HMGN3-AS1 Gene

Post-translational modifications for HMGN3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN3-AS1 Gene

Domains & Families for HMGN3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN3-AS1 Gene

Function for HMGN3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN3-AS1 Gene

Localization for HMGN3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN3-AS1 Gene

Pathways & Interactions for HMGN3-AS1 Gene

SuperPathways for HMGN3-AS1 Gene

No Data Available

Interacting Proteins for HMGN3-AS1 Gene

Gene Ontology (GO) - Biological Process for HMGN3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HMGN3-AS1 Gene

Drugs & Compounds for HMGN3-AS1 Gene

No Compound Related Data Available

Transcripts for HMGN3-AS1 Gene

mRNA/cDNA for HMGN3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN3-AS1 Gene

No ASD Table

Relevant External Links for HMGN3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HMGN3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN3-AS1 Gene

genes like me logo Genes that share expression patterns with HMGN3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN3-AS1 Gene

Orthologs for HMGN3-AS1 Gene

Evolution for HMGN3-AS1 Gene

Gene Tree for HMGN3-AS1 (if available)
Gene Tree for HMGN3-AS1 (if available)

No data available for Orthologs for HMGN3-AS1 Gene

Paralogs for HMGN3-AS1 Gene

No data available for Paralogs for HMGN3-AS1 Gene

Variants for HMGN3-AS1 Gene

Sequence variations from dbSNP and Humsavar for HMGN3-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000714822 -- 79,236,953(+) GAGCA(C/T)TACTC downstream-variant-500B
rs1000983137 -- 79,235,121(+) GGGAA(A/G)GTACT nc-transcript-variant, upstream-variant-2KB
rs1001352028 -- 79,234,753(+) CCCCG(C/T)CAGCC nc-transcript-variant, upstream-variant-2KB
rs1003268531 -- 79,235,138(+) TGGAA(A/G)AGCGT nc-transcript-variant, upstream-variant-2KB
rs1003298389 -- 79,232,643(+) CAGAC(A/G)GGGGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HMGN3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830706 CNV gain 17160897

Relevant External Links for HMGN3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMGN3-AS1 Gene

Disorders for HMGN3-AS1 Gene

Relevant External Links for HMGN3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HMGN3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGN3-AS1 Gene

Publications for HMGN3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for HMGN3-AS1 Gene

Sources for HMGN3-AS1 Gene

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