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Aliases for HMGN2P46 Gene

Aliases for HMGN2P46 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2 3 5
  • C15orf21 3 4
  • D-PCa-2 3 4
  • High Mobility Group Nucleosome-Binding Domain-Containing Protein 2 Pseudogene 46 4
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2
  • Chromosome 15 Open Reading Frame 21 2
  • Dresden Prostate Carcinoma 2 3
  • Dresden Prostate Cancer 2 3

External Ids for HMGN2P46 Gene

Previous HGNC Symbols for HMGN2P46 Gene

  • C15orf21

Previous GeneCards Identifiers for HMGN2P46 Gene

  • GC15P045804

Summaries for HMGN2P46 Gene

GeneCards Summary for HMGN2P46 Gene

HMGN2P46 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46) is a Pseudogene. Diseases associated with HMGN2P46 include Prostate Cancer.

Additional gene information for HMGN2P46 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN2P46 Gene

Genomics for HMGN2P46 Gene

Regulatory Elements for HMGN2P46 Gene

Enhancers for HMGN2P46 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H045022 1 ENCODE 5.1 -487.7 -487677 1 ARID4B SIN3A DMAP1 ZNF2 YY1 SP3 MXD4 REST ZNF592 KAT8 SORD HMGN2P46 GC15M045029 PIR54221
GH15H045521 0.9 ENCODE 0.4 +11.4 11352 2 ELF3 FOXA2 RB1 SIN3A ZEB1 RARA YY1 ZNF143 SMARCA5 ZBTB11 EIF3J-AS1 BLOC1S6 SLC30A4 HMGN2P46
GH15H045514 0.3 FANTOM5 0.7 +3.3 3325 0 HMGN2P46 SLC30A4
GH15H045492 0.3 FANTOM5 0.4 -18.8 -18825 0 C15orf48 SQOR BLOC1S6 PIR34649 HMGN2P46
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN2P46 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN2P46 Gene

Chromosome:
15
Start:
45,511,136 bp from pter
End:
45,586,290 bp from pter
Size:
75,155 bases
Orientation:
Plus strand

Genomic View for HMGN2P46 Gene

Genes around HMGN2P46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN2P46 Gene

Proteins for HMGN2P46 Gene

  • Protein details for HMGN2P46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86SG4-DPCA2_HUMAN
    Recommended name:
    Putative Dresden prostate carcinoma protein 2
    Protein Accession:
    Q86SG4
    Secondary Accessions:
    • Q495B5
    • Q86SH8
    • Q8N8I5

    Protein attributes for HMGN2P46 Gene

    Size:
    172 amino acids
    Molecular mass:
    20403 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HMGN2P46 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HMGN2P46 Gene

Post-translational modifications for HMGN2P46 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P46 Gene

Domains & Families for HMGN2P46 Gene

Protein Domains for HMGN2P46 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for HMGN2P46 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMGN2P46: view

No data available for Gene Families and UniProtKB/Swiss-Prot for HMGN2P46 Gene

Function for HMGN2P46 Gene

Phenotypes for HMGN2P46 Gene

genes like me logo Genes that share phenotypes with HMGN2P46: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for HMGN2P46
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P46 Gene

Localization for HMGN2P46 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN2P46 Gene

Pathways & Interactions for HMGN2P46 Gene

SuperPathways for HMGN2P46 Gene

No Data Available

Interacting Proteins for HMGN2P46 Gene

Gene Ontology (GO) - Biological Process for HMGN2P46 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN2P46 Gene

Drugs & Compounds for HMGN2P46 Gene

No Compound Related Data Available

Transcripts for HMGN2P46 Gene

Unigene Clusters for HMGN2P46 Gene

High mobility group nucleosomal binding domain 2 pseudogene 46:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for HMGN2P46
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P46 Gene

No ASD Table

Relevant External Links for HMGN2P46 Gene

GeneLoc Exon Structure for
HMGN2P46
ECgene alternative splicing isoforms for
HMGN2P46

Expression for HMGN2P46 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN2P46 Gene

mRNA differential expression in normal tissues according to GTEx for HMGN2P46 Gene

This gene is overexpressed in Prostate (x20.0).

NURSA nuclear receptor signaling pathways regulating expression of HMGN2P46 Gene:

HMGN2P46

SOURCE GeneReport for Unigene cluster for HMGN2P46 Gene:

Hs.574240

mRNA Expression by UniProt/SwissProt for HMGN2P46 Gene:

Q86SG4-DPCA2_HUMAN
Tissue specificity: Very high expression in prostate and prostate cancer. Faint expression in other tissues.
genes like me logo Genes that share expression patterns with HMGN2P46: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P46 Gene

Orthologs for HMGN2P46 Gene

Evolution for HMGN2P46 Gene

ENSEMBL:
Gene Tree for HMGN2P46 (if available)
TreeFam:
Gene Tree for HMGN2P46 (if available)

No data available for Orthologs for HMGN2P46 Gene

Paralogs for HMGN2P46 Gene

No data available for Paralogs for HMGN2P46 Gene

Variants for HMGN2P46 Gene

Sequence variations from dbSNP and Humsavar for HMGN2P46 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000027595 -- 45,533,493(+) AATCT(C/T)GGCTC intron-variant
rs1000055578 -- 45,509,698(+) TACTT(A/G)GAATA intron-variant, upstream-variant-2KB
rs1000178384 -- 45,529,009(+) TGCCT(C/T)AGATG intron-variant
rs1000232470 -- 45,529,289(+) TCACT(G/T)TGTTA intron-variant
rs1000241373 -- 45,536,524(+) CCTCC(C/G)GGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HMGN2P46 Gene

Variant ID Type Subtype PubMed ID
esv3569553 CNV gain 25503493
esv3892684 CNV gain 25118596
nsv1045556 CNV gain 25217958
nsv1160292 CNV duplication 26073780
nsv984066 CNV duplication 23825009

Relevant External Links for HMGN2P46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN2P46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMGN2P46 Gene

Disorders for HMGN2P46 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HMGN2P46 Gene - From: GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, hereditary, 5
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for HMGN2P46

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMGN2P46
genes like me logo Genes that share disorders with HMGN2P46: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HMGN2P46 Gene

Publications for HMGN2P46 Gene

  1. D-PCa-2: a novel transcript highly overexpressed in human prostate and prostate cancer. (PMID: 15027122) Weigle B … Rieber EP (International journal of cancer 2004) 2 3 4 60
  2. A new RNA-seq method to detect the transcription and non-coding RNA in prostate cancer. (PMID: 24043589) Zhang XM … Men TY (Pathology oncology research : POR 2014) 2 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  4. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 60
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3 60

Products for HMGN2P46 Gene

Sources for HMGN2P46 Gene

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