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Aliases for HMGN2P46 Gene

Aliases for HMGN2P46 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2 3 5
  • C15orf21 3 4
  • D-PCa-2 3 4
  • High Mobility Group Nucleosome-Binding Domain-Containing Protein 2 Pseudogene 46 4
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2
  • Chromosome 15 Open Reading Frame 21 2
  • Dresden Prostate Carcinoma 2 3
  • Dresden Prostate Cancer 2 3

External Ids for HMGN2P46 Gene

Previous HGNC Symbols for HMGN2P46 Gene

  • C15orf21

Previous GeneCards Identifiers for HMGN2P46 Gene

  • GC15P045804

Summaries for HMGN2P46 Gene

GeneCards Summary for HMGN2P46 Gene

HMGN2P46 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46) is a Pseudogene. Diseases associated with HMGN2P46 include Prostate Cancer.

Additional gene information for HMGN2P46 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN2P46 Gene

Genomics for HMGN2P46 Gene

GeneHancer (GH) Regulatory Elements for HMGN2P46 Gene

Promoters and enhancers for HMGN2P46 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I045022 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 5.1 -487.7 -487718 2 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 POLR2B SP3 RXRA MXD4 SORD HMGN2P46 PIR54221 GC15M045029
GH15I045521 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.4 +11.4 11352 2.4 FOXA2 SIN3A ZNF48 YY1 ZNF143 REST ZNF592 NFIL3 HMBOX1 HNF4A SLC30A4 EIF3J-AS1 BLOC1S6 HMGN2P46
GH15I045585 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.2 +76.6 76639 4.3 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ENSG00000275709 ENSG00000260170 BLOC1S6 SQOR SPG11 SLC30A4 ENSG00000259539 GC15P045592 HMGN2P46
GH15I045549 Enhancer 0.8 ENCODE 0.3 +38.6 38598 1.4 ATF1 NFRKB DMAP1 ZBTB40 CHAMP1 POLR2B FOS CREM SMAD5 ZBTB11 SLC30A4 ENSG00000259539 C15orf48 ENSG00000259681 SNORA41B HMGN2P46
GH15I045583 Enhancer 1.2 FANTOM5 ENCODE 0.2 +72.9 72936 1.3 PKNOX1 ATF1 NFRKB ZBTB40 ZNF766 ATF7 CAVIN1 ZBTB11 CEBPB USF2 BLOC1S6 ENSG00000259539 SQOR C15orf48 ENSG00000275709 DPPA5P2 HMGN2P46
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGN2P46 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGN2P46 Gene

Genomic Locations for HMGN2P46 Gene
75,155 bases
Plus strand

Genomic View for HMGN2P46 Gene

Genes around HMGN2P46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN2P46 Gene

Proteins for HMGN2P46 Gene

  • Protein details for HMGN2P46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative Dresden prostate carcinoma protein 2
    Protein Accession:
    Secondary Accessions:
    • Q495B5
    • Q86SH8
    • Q8N8I5

    Protein attributes for HMGN2P46 Gene

    172 amino acids
    Molecular mass:
    20403 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HMGN2P46 Gene


neXtProt entry for HMGN2P46 Gene

Post-translational modifications for HMGN2P46 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P46 Gene

Domains & Families for HMGN2P46 Gene

Protein Domains for HMGN2P46 Gene


Suggested Antigen Peptide Sequences for HMGN2P46 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMGN2P46: view

No data available for Gene Families and UniProtKB/Swiss-Prot for HMGN2P46 Gene

Function for HMGN2P46 Gene

Phenotypes for HMGN2P46 Gene

genes like me logo Genes that share phenotypes with HMGN2P46: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P46 Gene

Localization for HMGN2P46 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN2P46 Gene

Pathways & Interactions for HMGN2P46 Gene

SuperPathways for HMGN2P46 Gene

No Data Available

Interacting Proteins for HMGN2P46 Gene

Gene Ontology (GO) - Biological Process for HMGN2P46 Gene


No data available for Pathways by source and SIGNOR curated interactions for HMGN2P46 Gene

Drugs & Compounds for HMGN2P46 Gene

No Compound Related Data Available

Transcripts for HMGN2P46 Gene

Unigene Clusters for HMGN2P46 Gene

High mobility group nucleosomal binding domain 2 pseudogene 46:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P46 Gene

No ASD Table

Relevant External Links for HMGN2P46 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HMGN2P46 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN2P46 Gene

mRNA differential expression in normal tissues according to GTEx for HMGN2P46 Gene

This gene is overexpressed in Prostate (x20.0).

NURSA nuclear receptor signaling pathways regulating expression of HMGN2P46 Gene:


SOURCE GeneReport for Unigene cluster for HMGN2P46 Gene:


mRNA Expression by UniProt/SwissProt for HMGN2P46 Gene:

Tissue specificity: Very high expression in prostate and prostate cancer. Faint expression in other tissues.
genes like me logo Genes that share expression patterns with HMGN2P46: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P46 Gene

Orthologs for HMGN2P46 Gene

Evolution for HMGN2P46 Gene

Gene Tree for HMGN2P46 (if available)
Gene Tree for HMGN2P46 (if available)

No data available for Orthologs for HMGN2P46 Gene

Paralogs for HMGN2P46 Gene

No data available for Paralogs for HMGN2P46 Gene

Variants for HMGN2P46 Gene

Sequence variations from dbSNP and Humsavar for HMGN2P46 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000027595 -- 45,533,493(+) C/T intron_variant
rs1000055578 -- 45,509,698(+) G/A upstream_transcript_variant
rs1000178384 -- 45,529,009(+) C/T intron_variant
rs1000232470 -- 45,529,289(+) T/G intron_variant
rs1000241373 -- 45,536,524(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HMGN2P46 Gene

Variant ID Type Subtype PubMed ID
esv3569553 CNV gain 25503493
esv3892684 CNV gain 25118596
nsv1045556 CNV gain 25217958
nsv1160292 CNV duplication 26073780
nsv984066 CNV duplication 23825009

Additional Variant Information for HMGN2P46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMGN2P46 Gene

Disorders for HMGN2P46 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HMGN2P46 Gene - From: GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for HMGN2P46

genes like me logo Genes that share disorders with HMGN2P46: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HMGN2P46 Gene

Publications for HMGN2P46 Gene

  1. D-PCa-2: a novel transcript highly overexpressed in human prostate and prostate cancer. (PMID: 15027122) Weigle B … Rieber EP (International journal of cancer 2004) 2 3 4 58
  2. A new RNA-seq method to detect the transcription and non-coding RNA in prostate cancer. (PMID: 24043589) Zhang XM … Men TY (Pathology oncology research : POR 2014) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  4. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3 58

Products for HMGN2P46 Gene

Sources for HMGN2P46 Gene

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