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Aliases for HMGN2P46 Gene

Aliases for HMGN2P46 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2 3
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2 3
  • C15orf21 3 4
  • D-PCa-2 3 4
  • High Mobility Group Nucleosome-Binding Domain-Containing Protein 2 Pseudogene 46 4
  • Chromosome 15 Open Reading Frame 21 2
  • Dresden Prostate Carcinoma 2 3
  • Dresden Prostate Cancer 2 3

External Ids for HMGN2P46 Gene

Previous HGNC Symbols for HMGN2P46 Gene

  • C15orf21

Previous GeneCards Identifiers for HMGN2P46 Gene

  • GC15P045804

Summaries for HMGN2P46 Gene

GeneCards Summary for HMGN2P46 Gene

HMGN2P46 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN2P46 Gene

Genomics for HMGN2P46 Gene

Genomic Location for HMGN2P46 Gene

Start:
45,511,136 bp from pter
End:
45,586,290 bp from pter
Size:
75,155 bases
Orientation:
Plus strand

Genomic View for HMGN2P46 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HMGN2P46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN2P46 Gene

No data available for Regulatory Elements for HMGN2P46 Gene

Proteins for HMGN2P46 Gene

  • Protein details for HMGN2P46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86SG4-DPCA2_HUMAN
    Recommended name:
    Putative Dresden prostate carcinoma protein 2
    Protein Accession:
    Q86SG4
    Secondary Accessions:
    • Q495B5
    • Q86SH8
    • Q8N8I5

    Protein attributes for HMGN2P46 Gene

    Size:
    172 amino acids
    Molecular mass:
    20403 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HMGN2P46 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HMGN2P46 Gene

Proteomics data for HMGN2P46 Gene at MOPED

Post-translational modifications for HMGN2P46 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P46 Gene

Domains for HMGN2P46 Gene

Gene Families for HMGN2P46 Gene

HGNC:
  • HMGNP :High mobility group / Nucleosome binding pseudogenes

Protein Domains for HMGN2P46 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for HMGN2P46 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMGN2P46: view

No data available for UniProtKB/Swiss-Prot for HMGN2P46 Gene

Function for HMGN2P46 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HMGN2P46 Gene

Localization for HMGN2P46 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN2P46 Gene

Pathways for HMGN2P46 Gene

SuperPathways for HMGN2P46 Gene

No Data Available

Interacting Proteins for HMGN2P46 Gene

Selected Interacting proteins: Q86SG4-DPCA2_HUMAN for HMGN2P46 Gene via I2D

Symbol External ID(s) Details
AR

Gene Ontology (GO) - Biological Process for HMGN2P46 Gene

None

No data available for Pathways by source for HMGN2P46 Gene

Transcripts for HMGN2P46 Gene

Unigene Clusters for HMGN2P46 Gene

High mobility group nucleosomal binding domain 2 pseudogene 46:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HMGN2P46

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P46 Gene

No ASD Table

Relevant External Links for HMGN2P46 Gene

GeneLoc Exon Structure for
HMGN2P46
ECgene alternative splicing isoforms for
HMGN2P46

Expression for HMGN2P46 Gene

mRNA expression in normal human tissues for HMGN2P46 Gene

mRNA differential expression in normal tissues according to GTEx for HMGN2P46 Gene

This gene is overexpressed in Prostate (20.0).

SOURCE GeneReport for Unigene cluster for HMGN2P46 Gene Hs.574240

mRNA Expression by UniProt/SwissProt for HMGN2P46 Gene

Q86SG4-DPCA2_HUMAN
Tissue specificity: Very high expression in prostate and prostate cancer. Faint expression in other tissues.
genes like me logo Genes that share expressions with HMGN2P46: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein expression for HMGN2P46 Gene

Orthologs for HMGN2P46 Gene

Evolution for HMGN2P46 Gene

ENSEMBL:
Gene Tree for HMGN2P46 (if available)
TreeFam:
Gene Tree for HMGN2P46 (if available)

No data available for Orthologs for HMGN2P46 Gene

Paralogs for HMGN2P46 Gene

No data available for Paralogs for HMGN2P46 Gene

Variants for HMGN2P46 Gene

Sequence variations from dbSNP and Humsavar for HMGN2P46 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs2120016 -- 45,554,867(+) ctgtt(C/T)tacac intron-variant
rs2120018 -- 45,548,841(-) TCCTG(C/G)TAGCA intron-variant
rs2453537 -- 45,526,053(+) GAGGC(A/T)TAGCT intron-variant
rs2453538 -- 45,526,127(+) cccct(C/T)ctttc intron-variant
rs2453539 -- 45,526,149(+) ttccc(C/T)ttccc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HMGN2P46 Gene

Variant ID Type Subtype PubMed ID
nsv904188 CNV Gain 21882294
dgv2379n71 CNV Gain 21882294

Relevant External Links for HMGN2P46 Gene

HapMap Linkage Disequilibrium report
HMGN2P46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HMGN2P46 Gene

Disorders for HMGN2P46 Gene

No disorders were found for HMGN2P46 Gene.

No data available for UniProtKB/Swiss-Prot for HMGN2P46 Gene

Publications for HMGN2P46 Gene

  1. D-PCa-2: a novel transcript highly overexpressed in human prostate and prostate cancer. (PMID: 15027122) Weigle B. … Rieber E.P. (Int. J. Cancer 2004) 2 3 4
  2. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. A New RNA-Seq Method to Detect the Transcription and Non-coding RNA in Prostate Cancer. (PMID: 24043589) Zhang X.M. … Men T.Y. (Pathol. Oncol. Res. 2014) 2 3
  5. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for HMGN2P46 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HMGN2P46
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HMGN2P46
    • Block miRNA regulation of HMGN2P46 using miScript Target Protectors

    Sources for HMGN2P46 Gene

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