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Aliases for HMGN2P43 Gene

Subcategory (RNA class) for HMGN2P43 Gene

antisense

Aliases for HMGN2P43 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43 2 3
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43 2
  • RP11-794C22.2 5

External Ids for HMGN2P43 Gene

ORGUL Members for HMGN2P43 Gene

Previous GeneCards Identifiers for HMGN2P43 Gene

  • GC00U931515
  • GC17U901773

Summaries for HMGN2P43 Gene

GeneCards Summary for HMGN2P43 Gene

HMGN2P43 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN2P43 Gene

Genomics for HMGN2P43 Gene

Regulatory Elements for HMGN2P43 Gene

Enhancers for HMGN2P43 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F075776 2.2 ENCODE 16.2 -567.2 -567235 4.9 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ENSG00000266980 MFSD11 UNK NT5C METTL23 ENSG00000264829 HMGN2P43 ENSG00000267342 MRPL38 H3F3B
GH17F076734 2.2 ENCODE 16.2 +391.5 391498 7.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 UNK ENSG00000267342 MXRA7 CDK3 ENSG00000266980 TRIM65 HMGN2P43 MFSD11 H3F3B METTL23
GH17F076510 1.8 FANTOM5 Ensembl ENCODE 16.2 +168.9 168878 7.7 HDGF PKNOX1 ARNT WRNIP1 SIN3A FEZF1 YBX1 ZNF2 ZNF416 ZNF207 UNK TRIM65 ENSG00000267342 ENSG00000266980 CDK3 ENSG00000267801 ENSG00000267546 HMGN2P43 ENSG00000264829 SPHK1
GH17F077095 1.7 FANTOM5 Ensembl ENCODE 16.2 +752.2 752195 5.8 HDGF PKNOX1 ARNT MLX ARID4B SIN3A DMAP1 YBX1 YY1 SLC30A9 SEC14L1 HMGN2P43 RNU4-47P RPL7P49 ENSG00000267078 SPHK1 ST6GALNAC2 JMJD6 SNHG20 GC17P077101
GH17F077106 1.7 FANTOM5 Ensembl ENCODE 16.2 +764.0 764005 6.1 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 FOS ZNF263 SP3 SEC14L1 HMGN2P43 METTL23 RNU4-47P ENSG00000267546 ENSG00000267543 MFSD11 ENSG00000272386 MIR6516 SEPT9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN2P43 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN2P43 Gene

Chromosome:
17
Start:
76,345,761 bp from pter
End:
76,346,081 bp from pter
Size:
321 bases
Orientation:
Plus strand

Genomic View for HMGN2P43 Gene

Genes around HMGN2P43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN2P43 Gene

Proteins for HMGN2P43 Gene

Post-translational modifications for HMGN2P43 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P43 Gene

Domains & Families for HMGN2P43 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN2P43 Gene

Function for HMGN2P43 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P43 Gene

Localization for HMGN2P43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN2P43 Gene

Pathways & Interactions for HMGN2P43 Gene

SuperPathways for HMGN2P43 Gene

No Data Available

Interacting Proteins for HMGN2P43 Gene

Gene Ontology (GO) - Biological Process for HMGN2P43 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN2P43 Gene

Transcripts for HMGN2P43 Gene

mRNA/cDNA for HMGN2P43 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P43 Gene

No ASD Table

Relevant External Links for HMGN2P43 Gene

GeneLoc Exon Structure for
HMGN2P43
ECgene alternative splicing isoforms for
HMGN2P43

Expression for HMGN2P43 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGN2P43 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGN2P43 Gene:

HMGN2P43
genes like me logo Genes that share expression patterns with HMGN2P43: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGN2P43 Gene

Orthologs for HMGN2P43 Gene

Evolution for HMGN2P43 Gene

ENSEMBL:
Gene Tree for HMGN2P43 (if available)
TreeFam:
Gene Tree for HMGN2P43 (if available)

No data available for Orthologs for HMGN2P43 Gene

Paralogs for HMGN2P43 Gene

No data available for Paralogs for HMGN2P43 Gene

Variants for HMGN2P43 Gene

Relevant External Links for HMGN2P43 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN2P43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN2P43 Gene

Disorders for HMGN2P43 Gene

No disorders were found for HMGN2P43 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN2P43 Gene

Publications for HMGN2P43 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGN2P43 Gene

Sources for HMGN2P43 Gene

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