Aliases for HMGN2P40 Gene
Subcategory (RNA class) for HMGN2P40 Gene
lncRNA
Aliases for HMGN2P40 Gene
External Ids for HMGN2P40 Gene
- HGNC: 39411
- Entrez Gene: 100874484
- Ensembl: ENSG00000260602
ORGUL Members for HMGN2P40 Gene
Previous GeneCards Identifiers for HMGN2P40 Gene
- GC00U931503
- GC15P068548
Summaries for HMGN2P40 Gene
GeneCards Summary for HMGN2P40 Gene
HMGN2P40 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 40) is a Pseudogene, and is affiliated with the lncRNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN2P40 Gene
Genomics for HMGN2P40 Gene
Regulatory Elements for HMGN2P40 Gene
Enhancers for HMGN2P40 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH15G068256 | 1.2 | ENCODE dbSUPER | 0.7 | +2.5 | 2509 | 1.6 | ELF3 ARID4B SIN3A ZNF48 RAD21 YY1 THAP11 ZNF202 JUNB CEBPB | FEM1B CLN6 HMGN2P40 |
| GH15G068253 | 0.7 | ENCODE | 0.7 | -1.4 | -1422 | 0.2 | CTCF ZNF2 RAD21 ZNF101 RFX5 ZNF547 ZNF143 SMC3 GATAD2A ZNF654 | HMGN2P40 ENSG00000260007 |
| GH15G068232 | 1 | Ensembl ENCODE | 0.3 | -21.4 | -21407 | 1.6 | ELF3 PKNOX1 SAP130 ZNF644 RARA ZNF335 PRDM10 CREM MTA2 GFI1B | CLN6 CALML4 ENSG00000260007 HMGN2P40 |
| GH15G068248 | 0.5 | Ensembl | 0.4 | -5.3 | -5349 | 0.8 | MEF2D ZNF146 SMAD5 | CLN6 HMGN2P40 ENSG00000260007 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGN2P40 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGN2P40 Gene
- Chromosome:
- 15
- Start:
- 68,254,549 bp from pter
- End:
- 68,254,939 bp from pter
- Size:
- 391 bases
- Orientation:
- Plus strand
Genomic View for HMGN2P40 Gene
Genes around HMGN2P40 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 15q23 by Ensembl
- 15q23 by Entrez Gene
- 15q23 by HGNC
HMGN2P40 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGN2P40 Gene
Proteins for HMGN2P40 Gene
Post-translational modifications for HMGN2P40 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGN2P40
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGN2P40
- Origene Custom Protein Services for HMGN2P40
- Search GeneTex for Proteins for HMGN2P40
Assay Products
No data available for DME Specific Peptides for HMGN2P40 Gene
Domains & Families for HMGN2P40 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN2P40 Gene
Function for HMGN2P40 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGN2P40
CRISPR Products
- Browse CRISPR knockouts for HMGN2P40
miRNA Products
- Search ViGene Biosciences for HMGN2P40
Inhibitory RNA Products
- Search ViGene Biosciences for HMGN2P40
Cell Line Products
- Search ViGene Biosciences for HMGN2P40
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P40 Gene
Localization for HMGN2P40 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN2P40 Gene
Transcripts for HMGN2P40 Gene
mRNA/cDNA for HMGN2P40 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGN2P40
miRNA Products
- Search ViGene Biosciences for HMGN2P40
Inhibitory RNA Products
- Search ViGene Biosciences for HMGN2P40
Flow Cytometry Products
Expression for HMGN2P40 Gene
mRNA differential expression in normal tissues according to GTEx for HMGN2P40 Gene
This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.6), Brain - Caudate (basal ganglia) (x5.4), and Brain - Putamen (basal ganglia) (x4.3).
NURSA nuclear receptor signaling pathways regulating expression of HMGN2P40 Gene:
HMGN2P40
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P40 Gene
Orthologs for HMGN2P40 Gene
No data available for Orthologs for HMGN2P40 Gene
Paralogs for HMGN2P40 Gene
No data available for Paralogs for HMGN2P40 Gene
Variants for HMGN2P40 Gene
Relevant External Links for HMGN2P40 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGN2P40
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN2P40 Gene
Disorders for HMGN2P40 Gene
No disorders were found for HMGN2P40 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN2P40 Gene
Publications for HMGN2P40 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGN2P40 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGN2P40
- Origene Custom Protein Services for HMGN2P40
- Browse OriGene Inhibitory RNA Products For HMGN2P40
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGN2P40
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGN2P40
- GenScript: Custom all cDNA clones Services for HMGN2P40
- GenScript Custom Purified and Recombinant Proteins Services for HMGN2P40
- GenScript Custom Assay Services for HMGN2P40
- GenScript Custom overexpressing Cell Line Services for HMGN2P40
- Browse GenScript CRISPR for HMGN2P40
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HMGN2P40
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGN2P40
- VectorBuilder custom plasmid, inducible vectors for HMGN2P40
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGN2P40
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGN2P40 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer