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Aliases for HMGN2P40 Gene

Subcategory (RNA class) for HMGN2P40 Gene

lncRNA

Aliases for HMGN2P40 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 40 2 3 5
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 40 2

External Ids for HMGN2P40 Gene

ORGUL Members for HMGN2P40 Gene

Previous GeneCards Identifiers for HMGN2P40 Gene

  • GC00U931503
  • GC15P068548

Summaries for HMGN2P40 Gene

GeneCards Summary for HMGN2P40 Gene

HMGN2P40 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 40) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN2P40 Gene

Genomics for HMGN2P40 Gene

Regulatory Elements for HMGN2P40 Gene

Enhancers for HMGN2P40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G068256 1.2 ENCODE dbSUPER 0.7 +2.5 2509 1.6 ELF3 ARID4B SIN3A ZNF48 RAD21 YY1 THAP11 ZNF202 JUNB CEBPB FEM1B CLN6 HMGN2P40
GH15G068253 0.7 ENCODE 0.7 -1.4 -1422 0.2 CTCF ZNF2 RAD21 ZNF101 RFX5 ZNF547 ZNF143 SMC3 GATAD2A ZNF654 HMGN2P40 ENSG00000260007
GH15G068232 1 Ensembl ENCODE 0.3 -21.4 -21407 1.6 ELF3 PKNOX1 SAP130 ZNF644 RARA ZNF335 PRDM10 CREM MTA2 GFI1B CLN6 CALML4 ENSG00000260007 HMGN2P40
GH15G068248 0.5 Ensembl 0.4 -5.3 -5349 0.8 MEF2D ZNF146 SMAD5 CLN6 HMGN2P40 ENSG00000260007
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN2P40 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN2P40 Gene

Chromosome:
15
Start:
68,254,549 bp from pter
End:
68,254,939 bp from pter
Size:
391 bases
Orientation:
Plus strand

Genomic View for HMGN2P40 Gene

Genes around HMGN2P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN2P40 Gene

Proteins for HMGN2P40 Gene

Post-translational modifications for HMGN2P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P40 Gene

Domains & Families for HMGN2P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN2P40 Gene

Function for HMGN2P40 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P40 Gene

Localization for HMGN2P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN2P40 Gene

Pathways & Interactions for HMGN2P40 Gene

SuperPathways for HMGN2P40 Gene

No Data Available

Interacting Proteins for HMGN2P40 Gene

Gene Ontology (GO) - Biological Process for HMGN2P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN2P40 Gene

Drugs & Compounds for HMGN2P40 Gene

No Compound Related Data Available

Transcripts for HMGN2P40 Gene

mRNA/cDNA for HMGN2P40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P40 Gene

No ASD Table

Relevant External Links for HMGN2P40 Gene

GeneLoc Exon Structure for
HMGN2P40
ECgene alternative splicing isoforms for
HMGN2P40

Expression for HMGN2P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN2P40 Gene

mRNA differential expression in normal tissues according to GTEx for HMGN2P40 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.6), Brain - Caudate (basal ganglia) (x5.4), and Brain - Putamen (basal ganglia) (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of HMGN2P40 Gene:

HMGN2P40
genes like me logo Genes that share expression patterns with HMGN2P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P40 Gene

Orthologs for HMGN2P40 Gene

Evolution for HMGN2P40 Gene

ENSEMBL:
Gene Tree for HMGN2P40 (if available)
TreeFam:
Gene Tree for HMGN2P40 (if available)

No data available for Orthologs for HMGN2P40 Gene

Paralogs for HMGN2P40 Gene

No data available for Paralogs for HMGN2P40 Gene

Variants for HMGN2P40 Gene

Relevant External Links for HMGN2P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN2P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN2P40 Gene

Disorders for HMGN2P40 Gene

No disorders were found for HMGN2P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN2P40 Gene

Publications for HMGN2P40 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGN2P40 Gene

Sources for HMGN2P40 Gene

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