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HMGN2P38 Gene(Pseudogene)

High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 38

GCID:
GC11P073580
GIFtS:
8
Genes Participants
UDN Logo

Aliases for HMGN2P38 Gene

Aliases for HMGN2P38 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 38 2 3 5
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 38 2

External Ids for HMGN2P38 Gene

Previous GeneCards Identifiers for HMGN2P38 Gene

  • GC00U931535
  • GC11P073292

Summaries for HMGN2P38 Gene

GeneCards Summary for HMGN2P38 Gene

HMGN2P38 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 38) is a Pseudogene.

Additional gene information for HMGN2P38 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN2P38 Gene

Genomics for HMGN2P38 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for HMGN2P38 Gene

Promoters and enhancers for HMGN2P38 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11I073577 Enhancer 0.5 ENCODE 0.8 -2.6 -2578 1.1 ZNF687 PRDM6 ZNF189 NR2F1 FOXP2 ZNF384 ZNF18 FAM168A ENSG00000255928 HMGN2P38 GC11M073518
GH11I073569 Enhancer 0.7 ENCODE 0.4 -9.6 -9637 1.3 ZBTB6 ZBTB21 ZNF449 ZFP64 INSM2 ZNF697 HIC1 FOSL1 ZNF335 PATZ1 FAM168A ENSG00000206913 ARHGEF17 C2CD3 POLD3 ENSG00000255928 RELT HMGN2P38 GC11M073518
GH11I073555 Enhancer 0.8 ENCODE 0.3 -24.9 -24945 0.2 SOX13 ESRRA FOXA2 SAP130 CEBPG ZNF644 RAD21 RARA ZNF7 YY1 HMGN2P38 GC11M073518 FAM168A
GH11I073537 Enhancer 0.8 Ensembl ENCODE 0.3 -41.9 -41926 2 MEIS2 PKNOX1 IKZF1 NBN RCOR1 ELF1 IKZF2 RUNX3 CHD2 ARHGEF17 FAM168A RELT PLEKHB1 ENSG00000256448 MRPL48 ENSG00000255928 GC11M073518 HMGN2P38
GH11I073554 Enhancer 0.6 ENCODE 0.3 -25.3 -25255 0.2 ESRRA RXRA EBF1 HMG20A YY1 JUND KLF16 IKZF1 BCL6 KDM6A HMGN2P38 GC11M073518 FAM168A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGN2P38 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGN2P38 Gene

Genomic Locations for HMGN2P38 Gene
chr11:73,580,146-73,580,556
(GRCh38/hg38)
Size:
411 bases
Orientation:
Plus strand
chr11:73,291,298-73,291,562
(GRCh37/hg19)

Genomic View for HMGN2P38 Gene

Genes around HMGN2P38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P38 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGN2P38 Gene

Proteins for HMGN2P38 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGN2P38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P38 Gene

Domains & Families for HMGN2P38 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN2P38 Gene

Function for HMGN2P38 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P38 Gene

Localization for HMGN2P38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN2P38 Gene

Pathways & Interactions for HMGN2P38 Gene

SuperPathways for HMGN2P38 Gene

PathCards logo More details on SuperPathways for HMGN2P38
No Data Available

Interacting Proteins for HMGN2P38 Gene

Gene Ontology (GO) - Biological Process for HMGN2P38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN2P38 Gene

Drugs & Compounds for HMGN2P38 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGN2P38 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HMGN2P38 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P38 Gene

No ASD Table

Relevant External Links for HMGN2P38 Gene

GeneLoc Exon Structure for
HMGN2P38
ECgene alternative splicing isoforms for
HMGN2P38

Expression for HMGN2P38 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN2P38 Gene

mRNA expression in normal human tissues for HMGN2P38 Gene
mRNA expression by GTEx for HMGN2P38 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGN2P38 Gene:

HMGN2P38
genes like me logo Genes that share expression patterns with HMGN2P38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P38 Gene

Orthologs for HMGN2P38 Gene

Evolution for HMGN2P38 Gene

ENSEMBL:
Gene Tree for HMGN2P38 (if available)
TreeFam:
Gene Tree for HMGN2P38 (if available)

No data available for Orthologs for HMGN2P38 Gene

Paralogs for HMGN2P38 Gene

No data available for Paralogs for HMGN2P38 Gene

Variants for HMGN2P38 Gene

Additional Variant Information for HMGN2P38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN2P38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN2P38 Gene

Disorders for HMGN2P38 Gene

No disorders were found for HMGN2P38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN2P38 Gene

Publications for HMGN2P38 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGN2P38 Gene

Sources for HMGN2P38 Gene

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