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HMGN1P30 Gene(Pseudogene)

High Mobility Group Nucleosome Binding Domain 1 Pseudogene 30

GCID:
GC18M058017
GIFtS:
13
Genes Participants
UDN Logo

Aliases for HMGN1P30 Gene

Aliases for HMGN1P30 Gene

  • High Mobility Group Nucleosome Binding Domain 1 Pseudogene 30 2 3 5
  • High-Mobility Group Nucleosome Binding Domain 1 Pseudogene 30 2

External Ids for HMGN1P30 Gene

Previous GeneCards Identifiers for HMGN1P30 Gene

  • GC18M055687
  • GC18U900644

Summaries for HMGN1P30 Gene

GeneCards Summary for HMGN1P30 Gene

HMGN1P30 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 30) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN1P30 Gene

Genomics for HMGN1P30 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGN1P30 Gene

Enhancers for HMGN1P30 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G058220 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10 -204.3 -204266 5.6 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 YY1 ZNF766 FOS DEK ZNF263 HMGN1P30 NEDD4L MALT1 LOC105372143 ENSG00000267504
GH18G058041 1.4 FANTOM5 ENCODE 11.4 -25.4 -25353 6.4 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 ZNF207 KLF13 HMGN1P30 NEDD4L LOC105372143
GH18G058283 1.4 Ensembl ENCODE dbSUPER 10.2 -268.6 -268601 7.7 PKNOX1 FOXA2 ZFP64 YY1 TCF12 GATA2 FOS JUNB PPARG SSRP1 HMGN1P30 MIR122 MIR3591 ENSG00000267504 LOC105372143
GH18G058135 1.4 Ensembl ENCODE dbSUPER 10.1 -116.7 -116717 1.6 PKNOX1 FEZF1 RAD21 YY1 ZNF302 ZNF143 DEK ZNF654 CBFB REST NEDD4L HMGN1P30 LOC105372143
GH18G057770 1.5 Ensembl ENCODE dbSUPER 9.1 +246.9 246909 3.4 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 SLC30A9 KLF7 ZHX2 MXD4 HMGN1P30 MRPS17P7 ATP8B1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN1P30 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN1P30 Gene

Chromosome:
18
Start:
58,017,657 bp from pter
End:
58,019,061 bp from pter
Size:
1,405 bases
Orientation:
Minus strand

Genomic View for HMGN1P30 Gene

Genes around HMGN1P30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN1P30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN1P30 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGN1P30 Gene

Proteins for HMGN1P30 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Protein Expression for HMGN1P30 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for HMGN1P30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN1P30 Gene

Domains & Families for HMGN1P30 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN1P30 Gene

Function for HMGN1P30 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P30 Gene

Localization for HMGN1P30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN1P30 Gene

Pathways & Interactions for HMGN1P30 Gene

SuperPathways for HMGN1P30 Gene

PathCards logo More details on SuperPathways for HMGN1P30
No Data Available

Interacting Proteins for HMGN1P30 Gene

Gene Ontology (GO) - Biological Process for HMGN1P30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN1P30 Gene

Drugs & Compounds for HMGN1P30 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGN1P30 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGN1P30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN1P30 Gene

No ASD Table

Relevant External Links for HMGN1P30 Gene

GeneLoc Exon Structure for
HMGN1P30
ECgene alternative splicing isoforms for
HMGN1P30

Expression for HMGN1P30 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN1P30 Gene

mRNA expression in normal human tissues for HMGN1P30 Gene
mRNA expression by GTEx for HMGN1P30 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for HMGN1P30 Gene



Protein tissue co-expression partners for HMGN1P30 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGN1P30 Gene:

HMGN1P30
genes like me logo Genes that share expression patterns with HMGN1P30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN1P30 Gene

Orthologs for HMGN1P30 Gene

Evolution for HMGN1P30 Gene

ENSEMBL:
Gene Tree for HMGN1P30 (if available)
TreeFam:
Gene Tree for HMGN1P30 (if available)

No data available for Orthologs for HMGN1P30 Gene

Paralogs for HMGN1P30 Gene

No data available for Paralogs for HMGN1P30 Gene

Variants for HMGN1P30 Gene

Relevant External Links for HMGN1P30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN1P30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P30 Gene

Disorders for HMGN1P30 Gene

No disorders were found for HMGN1P30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P30 Gene

Publications for HMGN1P30 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
  2. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3 64

Products for HMGN1P30 Gene

Sources for HMGN1P30 Gene

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