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Aliases for HMGN1P29 Gene

Aliases for HMGN1P29 Gene

  • High Mobility Group Nucleosome Binding Domain 1 Pseudogene 29 2 3
  • High-Mobility Group Nucleosome Binding Domain 1 Pseudogene 29 2
  • CTD-3199J23.6 5

External Ids for HMGN1P29 Gene

Previous GeneCards Identifiers for HMGN1P29 Gene

  • GC00U931461
  • GC17U901745

Summaries for HMGN1P29 Gene

GeneCards Summary for HMGN1P29 Gene

HMGN1P29 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 29) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN1P29 Gene

Genomics for HMGN1P29 Gene

Regulatory Elements for HMGN1P29 Gene

Enhancers for HMGN1P29 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G043322 1.7 Ensembl ENCODE dbSUPER 70 +178.2 178207 1.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 ENSG00000267340 ENSG00000267002 ASB16-AS1 HMGN1P29 DHX8 NBR2 ENSG00000267765 HSD17B1 CCR10 LINC00910
GH17G043366 1.7 Ensembl ENCODE dbSUPER 44.3 +223.8 223759 4.0 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 SSRP1 NBR2 DHX8 HMGN1P29 LINC00910 ASB16-AS1 ENSG00000267340 ENSG00000267002 PSME3 NBR1 MEOX1
GH17G044101 1.7 Ensembl ENCODE dbSUPER 18.1 +962.7 962699 12.5 CREB3L1 MLX ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 ASB16-AS1 ASB16 NAGS G6PC3 HMGN1P29 LINC00910 C17orf53 DHX8 LSM12 RNU6-131P
GH17G042308 2 FANTOM5 Ensembl ENCODE dbSUPER 14.4 -828.9 -828900 15.9 CREB3L1 MLX AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 TBX21 STAT5A HMGN1P29 CCR10 ENSG00000267002 CNTNAP1 STAT5B ATP6V0A1 CAVIN1 HSD17B1 DHX58
GH17G042623 1.5 Ensembl ENCODE dbSUPER 18.6 -520.8 -520753 1.9 PKNOX1 ATF1 CREB3L1 ARNT TCF12 GTF3C2 ZNF766 GATA2 ZNF143 FOS DHX8 TUBG2 HMGN1P29 RETREG3 VPS25 PSME3 ENSG00000267758 LINC00910 WNK4 ATP5LP7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN1P29 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN1P29 Gene

Chromosome:
17
Start:
43,144,956 bp from pter
End:
43,145,255 bp from pter
Size:
300 bases
Orientation:
Plus strand

Genomic View for HMGN1P29 Gene

Genes around HMGN1P29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN1P29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN1P29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN1P29 Gene

Proteins for HMGN1P29 Gene

Post-translational modifications for HMGN1P29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN1P29 Gene

Domains & Families for HMGN1P29 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN1P29 Gene

Function for HMGN1P29 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P29 Gene

Localization for HMGN1P29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN1P29 Gene

Pathways & Interactions for HMGN1P29 Gene

SuperPathways for HMGN1P29 Gene

No Data Available

Interacting Proteins for HMGN1P29 Gene

Gene Ontology (GO) - Biological Process for HMGN1P29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN1P29 Gene

Drugs & Compounds for HMGN1P29 Gene

No Compound Related Data Available

Transcripts for HMGN1P29 Gene

mRNA/cDNA for HMGN1P29 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN1P29 Gene

No ASD Table

Relevant External Links for HMGN1P29 Gene

GeneLoc Exon Structure for
HMGN1P29
ECgene alternative splicing isoforms for
HMGN1P29

Expression for HMGN1P29 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGN1P29 Gene:

HMGN1P29
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN1P29 Gene

Orthologs for HMGN1P29 Gene

Evolution for HMGN1P29 Gene

ENSEMBL:
Gene Tree for HMGN1P29 (if available)
TreeFam:
Gene Tree for HMGN1P29 (if available)

No data available for Orthologs for HMGN1P29 Gene

Paralogs for HMGN1P29 Gene

No data available for Paralogs for HMGN1P29 Gene

Variants for HMGN1P29 Gene

Relevant External Links for HMGN1P29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN1P29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P29 Gene

Disorders for HMGN1P29 Gene

No disorders were found for HMGN1P29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P29 Gene

Publications for HMGN1P29 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
  2. Functional characterization of BRCA1 gene variants by mini-gene splicing assay. (PMID: 24667779) Steffensen A.Y. … Hansen T.v. (Eur. J. Hum. Genet. 2014) 3 64
  3. A de novo complete BRCA1 gene deletion identified in a Spanish woman with early bilateral breast cancer. (PMID: 21989022) Garcia-Casado Z. … Lopez-Guerrero J.A. (BMC Med. Genet. 2011) 3 64

Products for HMGN1P29 Gene

Sources for HMGN1P29 Gene

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