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HMGN1P21 Gene(Pseudogene)

High Mobility Group Nucleosome Binding Domain 1 Pseudogene 21

GCID:
GC11M004009
GIFtS:
12
Genes Participants
UDN Logo

Aliases for HMGN1P21 Gene

Aliases for HMGN1P21 Gene

  • High Mobility Group Nucleosome Binding Domain 1 Pseudogene 21 2 3
  • High-Mobility Group Nucleosome Binding Domain 1 Pseudogene 21 2
  • RP11-438N5.2 5

External Ids for HMGN1P21 Gene

Summaries for HMGN1P21 Gene

GeneCards Summary for HMGN1P21 Gene

HMGN1P21 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 21) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN1P21 Gene

Genomics for HMGN1P21 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGN1P21 Gene

Enhancers for HMGN1P21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F003989 0.6 Ensembl ENCODE 0.8 +0.2 187 0.4 ZBTB33 ENSG00000206976 MIR4687 STIM1 ENSG00000229368 LOC105376527 HMGN1P21 HNRNPA1P76
GH11F003990 0.6 ENCODE 0.8 -0.5 -463 0.2 BCOR ZNF146 MTA2 MLLT1 TBX21 ENSG00000206976 MIR4687 STIM1 ENSG00000229368 LOC105376527 GC11M003987 HMGN1P21
GH11F003983 0.8 Ensembl ENCODE 0.4 +5.2 5203 2.8 CTCF REST RAD21 ZNF83 STIM1 HMGN1P21 HNRNPA1P76
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN1P21 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN1P21 Gene

Chromosome:
11
Start:
3,988,354 bp from pter
End:
3,989,603 bp from pter
Size:
1,250 bases
Orientation:
Minus strand

Genomic View for HMGN1P21 Gene

Genes around HMGN1P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN1P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN1P21 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGN1P21 Gene

Proteins for HMGN1P21 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Protein Expression for HMGN1P21 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for HMGN1P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN1P21 Gene

Domains & Families for HMGN1P21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN1P21 Gene

Function for HMGN1P21 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P21 Gene

Localization for HMGN1P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN1P21 Gene

Pathways & Interactions for HMGN1P21 Gene

SuperPathways for HMGN1P21 Gene

PathCards logo More details on SuperPathways for HMGN1P21
No Data Available

Interacting Proteins for HMGN1P21 Gene

Gene Ontology (GO) - Biological Process for HMGN1P21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN1P21 Gene

Drugs & Compounds for HMGN1P21 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGN1P21 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGN1P21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN1P21 Gene

No ASD Table

Relevant External Links for HMGN1P21 Gene

GeneLoc Exon Structure for
HMGN1P21
ECgene alternative splicing isoforms for
HMGN1P21

Expression for HMGN1P21 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGN1P21 Gene

mRNA expression in normal human tissues for HMGN1P21 Gene
mRNA expression by GTEx for HMGN1P21 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for HMGN1P21 Gene



Protein tissue co-expression partners for HMGN1P21 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGN1P21 Gene:

HMGN1P21
genes like me logo Genes that share expression patterns with HMGN1P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for HMGN1P21 Gene

Orthologs for HMGN1P21 Gene

Evolution for HMGN1P21 Gene

ENSEMBL:
Gene Tree for HMGN1P21 (if available)
TreeFam:
Gene Tree for HMGN1P21 (if available)

No data available for Orthologs for HMGN1P21 Gene

Paralogs for HMGN1P21 Gene

No data available for Paralogs for HMGN1P21 Gene

Variants for HMGN1P21 Gene

Relevant External Links for HMGN1P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN1P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P21 Gene

Disorders for HMGN1P21 Gene

No disorders were found for HMGN1P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P21 Gene

Publications for HMGN1P21 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGN1P21 Gene

Sources for HMGN1P21 Gene

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