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Aliases for HMGN1P17 Gene

Subcategory (RNA class) for HMGN1P17 Gene

lncRNA

Aliases for HMGN1P17 Gene

  • High Mobility Group Nucleosome Binding Domain 1 Pseudogene 17 2 3 5
  • High-Mobility Group Nucleosome Binding Domain 1 Pseudogene 17 2

External Ids for HMGN1P17 Gene

ORGUL Members for HMGN1P17 Gene

Previous GeneCards Identifiers for HMGN1P17 Gene

  • GC00U931422
  • GC05P055678

Summaries for HMGN1P17 Gene

GeneCards Summary for HMGN1P17 Gene

HMGN1P17 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 17) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN1P17 Gene

Genomics for HMGN1P17 Gene

Regulatory Elements for HMGN1P17 Gene

Enhancers for HMGN1P17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G056411 2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +32.7 32673 5.0 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 MAP3K1 LINC01948 HMGN1P17
GH05G056409 1.3 Ensembl ENCODE dbSUPER 0.3 +28.2 28205 1.7 HDAC1 JUN CEBPG FOSL1 ZNF366 ZSCAN5C FOSL2 FOS SMARCE1 RNF2 LINC01948 HMGN1P17
GH05G056389 0.8 ENCODE 0.4 +6.6 6606 0.6 ELF3 SOX13 ESRRA FOXA2 SAP130 RAD21 THRB RARA NR2F6 CREM LINC01948 ENSG00000237705 HMGN1P17
GH05G056440 1.6 FANTOM5 Ensembl ENCODE 0.2 +59.7 59650 1.5 PKNOX1 FOXA2 ARID4B FEZF1 SLC30A9 ELK1 KAT8 MIER3 MAFF PBX2 MAP3K1 LINC01948 HMGN1P17
GH05G056421 0.9 ENCODE dbSUPER 0.3 +40.3 40311 1.7 NFIB HLF DPF2 RAD21 ZBTB40 ZNF217 MBD2 JUND CTBP1 LINC01948 HMGN1P17
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGN1P17 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGN1P17 Gene

Chromosome:
5
Start:
56,381,781 bp from pter
End:
56,382,075 bp from pter
Size:
295 bases
Orientation:
Plus strand

Genomic View for HMGN1P17 Gene

Genes around HMGN1P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN1P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN1P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN1P17 Gene

Proteins for HMGN1P17 Gene

Post-translational modifications for HMGN1P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN1P17 Gene

Domains & Families for HMGN1P17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN1P17 Gene

Function for HMGN1P17 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P17 Gene

Localization for HMGN1P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN1P17 Gene

Pathways & Interactions for HMGN1P17 Gene

SuperPathways for HMGN1P17 Gene

No Data Available

Interacting Proteins for HMGN1P17 Gene

Gene Ontology (GO) - Biological Process for HMGN1P17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN1P17 Gene

Drugs & Compounds for HMGN1P17 Gene

No Compound Related Data Available

Transcripts for HMGN1P17 Gene

mRNA/cDNA for HMGN1P17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN1P17 Gene

No ASD Table

Relevant External Links for HMGN1P17 Gene

GeneLoc Exon Structure for
HMGN1P17
ECgene alternative splicing isoforms for
HMGN1P17

Expression for HMGN1P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN1P17 Gene

mRNA differential expression in normal tissues according to GTEx for HMGN1P17 Gene

This gene is overexpressed in Kidney - Cortex (x29.0), Thyroid (x7.9), and Ovary (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of HMGN1P17 Gene:

HMGN1P17
genes like me logo Genes that share expression patterns with HMGN1P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN1P17 Gene

Orthologs for HMGN1P17 Gene

Evolution for HMGN1P17 Gene

ENSEMBL:
Gene Tree for HMGN1P17 (if available)
TreeFam:
Gene Tree for HMGN1P17 (if available)

No data available for Orthologs for HMGN1P17 Gene

Paralogs for HMGN1P17 Gene

No data available for Paralogs for HMGN1P17 Gene

Variants for HMGN1P17 Gene

Relevant External Links for HMGN1P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN1P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P17 Gene

Disorders for HMGN1P17 Gene

No disorders were found for HMGN1P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P17 Gene

Publications for HMGN1P17 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGN1P17 Gene

Sources for HMGN1P17 Gene

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