Aliases for HMGN1P17 Gene
Subcategory (RNA class) for HMGN1P17 Gene
lncRNA
Aliases for HMGN1P17 Gene
External Ids for HMGN1P17 Gene
- HGNC: 39361
- Entrez Gene: 100874443
- Ensembl: ENSG00000250787
ORGUL Members for HMGN1P17 Gene
Previous GeneCards Identifiers for HMGN1P17 Gene
- GC00U931422
- GC05P055678
Summaries for HMGN1P17 Gene
GeneCards Summary for HMGN1P17 Gene
HMGN1P17 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 17) is a Pseudogene, and is affiliated with the lncRNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGN1P17 Gene
Genomics for HMGN1P17 Gene
Regulatory Elements for HMGN1P17 Gene
Enhancers for HMGN1P17 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH05G056411 | 2 | FANTOM5 Ensembl ENCODE dbSUPER | 0.3 | +32.7 | 32673 | 5.0 | HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 | MAP3K1 LINC01948 HMGN1P17 |
| GH05G056409 | 1.3 | Ensembl ENCODE dbSUPER | 0.3 | +28.2 | 28205 | 1.7 | HDAC1 JUN CEBPG FOSL1 ZNF366 ZSCAN5C FOSL2 FOS SMARCE1 RNF2 | LINC01948 HMGN1P17 |
| GH05G056389 | 0.8 | ENCODE | 0.4 | +6.6 | 6606 | 0.6 | ELF3 SOX13 ESRRA FOXA2 SAP130 RAD21 THRB RARA NR2F6 CREM | LINC01948 ENSG00000237705 HMGN1P17 |
| GH05G056440 | 1.6 | FANTOM5 Ensembl ENCODE | 0.2 | +59.7 | 59650 | 1.5 | PKNOX1 FOXA2 ARID4B FEZF1 SLC30A9 ELK1 KAT8 MIER3 MAFF PBX2 | MAP3K1 LINC01948 HMGN1P17 |
| GH05G056421 | 0.9 | ENCODE dbSUPER | 0.3 | +40.3 | 40311 | 1.7 | NFIB HLF DPF2 RAD21 ZBTB40 ZNF217 MBD2 JUND CTBP1 | LINC01948 HMGN1P17 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGN1P17 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGN1P17 Gene
- Chromosome:
- 5
- Start:
- 56,381,781 bp from pter
- End:
- 56,382,075 bp from pter
- Size:
- 295 bases
- Orientation:
- Plus strand
Genomic View for HMGN1P17 Gene
Genes around HMGN1P17 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q11.2 by Ensembl
- 5q11.2 by Entrez Gene
- 5q11.2 by HGNC
HMGN1P17 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGN1P17 Gene
Proteins for HMGN1P17 Gene
Post-translational modifications for HMGN1P17 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGN1P17
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGN1P17
- Origene Custom Protein Services for HMGN1P17
- Search GeneTex for Proteins for HMGN1P17
Assay Products
No data available for DME Specific Peptides for HMGN1P17 Gene
Domains & Families for HMGN1P17 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGN1P17 Gene
Function for HMGN1P17 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGN1P17
CRISPR Products
- Browse CRISPR knockouts for HMGN1P17
miRNA Products
- Search ViGene Biosciences for HMGN1P17
Inhibitory RNA Products
- Search ViGene Biosciences for HMGN1P17
Cell Line Products
- Search ViGene Biosciences for HMGN1P17
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P17 Gene
Localization for HMGN1P17 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGN1P17 Gene
Transcripts for HMGN1P17 Gene
mRNA/cDNA for HMGN1P17 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGN1P17
miRNA Products
- Search ViGene Biosciences for HMGN1P17
Inhibitory RNA Products
- Search ViGene Biosciences for HMGN1P17
Flow Cytometry Products
Expression for HMGN1P17 Gene
mRNA differential expression in normal tissues according to GTEx for HMGN1P17 Gene
This gene is overexpressed in Kidney - Cortex (x29.0), Thyroid (x7.9), and Ovary (x4.2).
NURSA nuclear receptor signaling pathways regulating expression of HMGN1P17 Gene:
HMGN1P17
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN1P17 Gene
Orthologs for HMGN1P17 Gene
No data available for Orthologs for HMGN1P17 Gene
Paralogs for HMGN1P17 Gene
No data available for Paralogs for HMGN1P17 Gene
Variants for HMGN1P17 Gene
Relevant External Links for HMGN1P17 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGN1P17
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P17 Gene
Disorders for HMGN1P17 Gene
No disorders were found for HMGN1P17 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P17 Gene
Publications for HMGN1P17 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGN1P17 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGN1P17
- Origene Custom Protein Services for HMGN1P17
- Browse OriGene Inhibitory RNA Products For HMGN1P17
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGN1P17
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGN1P17
- GenScript: Custom all cDNA clones Services for HMGN1P17
- GenScript Custom Purified and Recombinant Proteins Services for HMGN1P17
- GenScript Custom Assay Services for HMGN1P17
- GenScript Custom overexpressing Cell Line Services for HMGN1P17
- Browse GenScript CRISPR for HMGN1P17
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HMGN1P17
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGN1P17
- VectorBuilder custom plasmid, inducible vectors for HMGN1P17
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGN1P17
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGN1P17 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer