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Aliases for HMGB3P5 Gene

Aliases for HMGB3P5 Gene

  • High Mobility Group Box 3 Pseudogene 5 2 3 5
  • High-Mobility Group Box 3 Pseudogene 5 2

External Ids for HMGB3P5 Gene

Previous GeneCards Identifiers for HMGB3P5 Gene

  • GC10P112211

Summaries for HMGB3P5 Gene

GeneCards Summary for HMGB3P5 Gene

HMGB3P5 (High Mobility Group Box 3 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P5 Gene

Genomics for HMGB3P5 Gene

Regulatory Elements for HMGB3P5 Gene

Enhancers for HMGB3P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F110428 1 Ensembl ENCODE 10.8 -20.3 -20338 4.3 GTF2F1 KLF1 PKNOX1 RAD21 RFX5 GTF3C2 ZFHX2 GATA3 CTBP1 POLR3A SMC3 DUSP5 SMNDC1 HMGB3P5 ENSG00000270589 GC10P110318
GH10F110446 1.1 Ensembl ENCODE 0.8 -3.1 -3097 1.8 CTCF HINFP ETV1 JUN ZNF175 ZBTB40 ELK1 GATA2 FOS TRIM24 DUSP5 ENSG00000273143 HMGB3P5 GC10P110318
GH10F110455 1.5 FANTOM5 Ensembl ENCODE 0.4 +8.1 8107 7.0 PKNOX1 ZFP64 ZNF48 YY1 GLIS2 ELK1 FOS PAF1 REST SMARCB1 DUSP5 SMC3 LOC105378482 HMGB3P5
GH10F110406 1.7 FANTOM5 Ensembl ENCODE 0.3 -38.2 -38178 11.2 HDGF PKNOX1 WRNIP1 ARID4B SIN3A YBX1 ZNF48 BRCA1 YY1 ELK1 SMNDC1 DUSP5 SMC3 PDCD4-AS1 HMGB3P5 GC10P110318
GH10F110419 1.6 FANTOM5 Ensembl ENCODE 0.3 -28.8 -28804 5.2 HDGF PKNOX1 CREB3L1 SIN3A ZNF2 ZNF143 ZNF207 FOS KLF13 DEK DUSP5 BBIP1 SHOC2 HMGB3P5 GC10P110318
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P5 Gene

Chromosome:
10
Start:
110,450,605 bp from pter
End:
110,451,404 bp from pter
Size:
800 bases
Orientation:
Plus strand

Genomic View for HMGB3P5 Gene

Genes around HMGB3P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P5 Gene

Proteins for HMGB3P5 Gene

Post-translational modifications for HMGB3P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P5 Gene

Domains & Families for HMGB3P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P5 Gene

Function for HMGB3P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P5 Gene

Localization for HMGB3P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P5 Gene

Pathways & Interactions for HMGB3P5 Gene

SuperPathways for HMGB3P5 Gene

No Data Available

Interacting Proteins for HMGB3P5 Gene

Gene Ontology (GO) - Biological Process for HMGB3P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P5 Gene

Transcripts for HMGB3P5 Gene

mRNA/cDNA for HMGB3P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P5 Gene

No ASD Table

Relevant External Links for HMGB3P5 Gene

GeneLoc Exon Structure for
HMGB3P5
ECgene alternative splicing isoforms for
HMGB3P5

Expression for HMGB3P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB3P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P5 Gene:

HMGB3P5
genes like me logo Genes that share expression patterns with HMGB3P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGB3P5 Gene

Orthologs for HMGB3P5 Gene

Evolution for HMGB3P5 Gene

ENSEMBL:
Gene Tree for HMGB3P5 (if available)
TreeFam:
Gene Tree for HMGB3P5 (if available)

No data available for Orthologs for HMGB3P5 Gene

Paralogs for HMGB3P5 Gene

No data available for Paralogs for HMGB3P5 Gene

Variants for HMGB3P5 Gene

Relevant External Links for HMGB3P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P5 Gene

Disorders for HMGB3P5 Gene

No disorders were found for HMGB3P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P5 Gene

Publications for HMGB3P5 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB3P5 Gene

Sources for HMGB3P5 Gene

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