Aliases for HMGB3P5 Gene
Aliases for HMGB3P5 Gene
External Ids for HMGB3P5 Gene
- HGNC: 39105
- Entrez Gene: 645360
- Ensembl: ENSG00000237642
Previous GeneCards Identifiers for HMGB3P5 Gene
- GC10P112211
Summaries for HMGB3P5 Gene
GeneCards Summary for HMGB3P5 Gene
HMGB3P5 (High Mobility Group Box 3 Pseudogene 5) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P5 Gene
Genomics for HMGB3P5 Gene
Regulatory Elements for HMGB3P5 Gene
Enhancers for HMGB3P5 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH10G110428 | 1.1 | ENCODE dbSUPER | 10.8 | -20.4 | -20365 | 4.2 | GTF2F1 PKNOX1 KLF1 CEBPG RAD21 RFX5 FOSL1 GTF3C2 ZFHX2 CTBP1 | SMC3 DUSP5 SMNDC1 HMGB3P5 ENSG00000270589 GC10P110318 |
| GH10G110446 | 1.3 | Ensembl ENCODE dbSUPER | 0.7 | -3.1 | -3085 | 1.8 | HDAC1 CTCF HINFP JUN ETV1 ZNF175 CEBPG ZBTB40 FOSL1 ELK1 | DUSP5 ENSG00000273143 HMGB3P5 GC10P110318 |
| GH10G110455 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | +7.8 | 7837 | 6.4 | PKNOX1 ZFP64 ZNF48 YY1 GLIS2 ELK1 FOS PAF1 REST SMARCB1 | DUSP5 SMC3 LOC105378482 HMGB3P5 |
| GH10G110406 | 1.9 | FANTOM5 Ensembl ENCODE dbSUPER | 0.3 | -38.9 | -38884 | 9.8 | HDGF PKNOX1 WRNIP1 SIN3A YBX1 YY1 ZNF143 ZNF207 FOS DEK | DUSP5 SMNDC1 SMC3 HMGB3P5 GC10P110318 |
| GH10G110441 | 1.4 | Ensembl ENCODE dbSUPER | 0.4 | -8.7 | -8739 | 1.1 | HDAC1 HDGF TBP PKNOX1 ATF1 ARNT NFRKB ZBTB40 ELK1 SCRT2 | DUSP5 ENSG00000273143 HMGB3P5 GC10P110318 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGB3P5 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGB3P5 Gene
- Chromosome:
- 10
- Start:
- 110,450,605 bp from pter
- End:
- 110,451,404 bp from pter
- Size:
- 800 bases
- Orientation:
- Plus strand
Genomic View for HMGB3P5 Gene
Genes around HMGB3P5 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 10q25.2 by Ensembl
- 10q25.2 by Entrez Gene
- 10q25.2 by HGNC
HMGB3P5 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGB3P5 Gene
Proteins for HMGB3P5 Gene
Post-translational modifications for HMGB3P5 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGB3P5
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB3P5
- Origene Custom Protein Services for HMGB3P5
- Search GeneTex for Proteins for HMGB3P5
Assay Products
No data available for DME Specific Peptides for HMGB3P5 Gene
Domains & Families for HMGB3P5 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P5 Gene
Function for HMGB3P5 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGB3P5
CRISPR Products
- Browse CRISPR knockouts for HMGB3P5
miRNA Products
- Search ViGene Biosciences for HMGB3P5
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB3P5
Cell Line Products
- Search ViGene Biosciences for HMGB3P5
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P5 Gene
Localization for HMGB3P5 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P5 Gene
Transcripts for HMGB3P5 Gene
mRNA/cDNA for HMGB3P5 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGB3P5
miRNA Products
- Search ViGene Biosciences for HMGB3P5
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB3P5
Flow Cytometry Products
Expression for HMGB3P5 Gene
NURSA nuclear receptor signaling pathways regulating expression of HMGB3P5 Gene:
HMGB3P5
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P5 Gene
Orthologs for HMGB3P5 Gene
No data available for Orthologs for HMGB3P5 Gene
Paralogs for HMGB3P5 Gene
No data available for Paralogs for HMGB3P5 Gene
Variants for HMGB3P5 Gene
Relevant External Links for HMGB3P5 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGB3P5
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P5 Gene
Disorders for HMGB3P5 Gene
No disorders were found for HMGB3P5 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P5 Gene
Publications for HMGB3P5 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGB3P5 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB3P5
- Origene Custom Protein Services for HMGB3P5
- Browse OriGene Inhibitory RNA Products For HMGB3P5
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGB3P5
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGB3P5
- GenScript: Custom all cDNA clones Services for HMGB3P5
- GenScript Custom Purified and Recombinant Proteins Services for HMGB3P5
- GenScript Custom Assay Services for HMGB3P5
- GenScript Custom overexpressing Cell Line Services for HMGB3P5
- Browse GenScript CRISPR for HMGB3P5
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HMGB3P5
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGB3P5
- VectorBuilder custom plasmid, inducible vectors for HMGB3P5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGB3P5
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGB3P5 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer