Aliases for HMGB3P4 Gene
Subcategory (RNA class) for HMGB3P4 Gene
lncRNA
Aliases for HMGB3P4 Gene
External Ids for HMGB3P4 Gene
- HGNC: 39104
- Entrez Gene: 100873890
- Ensembl: ENSG00000228808
ORGUL Members for HMGB3P4 Gene
Previous GeneCards Identifiers for HMGB3P4 Gene
- GC00U931579
- GC13P100025
Summaries for HMGB3P4 Gene
GeneCards Summary for HMGB3P4 Gene
HMGB3P4 (High Mobility Group Box 3 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P4 Gene
Genomics for HMGB3P4 Gene
Regulatory Elements for HMGB3P4 Gene
Enhancers for HMGB3P4 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH13G099373 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 0.7 | +3.3 | 3264 | 4.4 | HDGF TBP PKNOX1 TBL1XR1 BMI1 ZNF207 RELB IKZF2 CREM CBFB | GPR18 UBAC2 GPR183 HMGB3P4 GC13P099385 |
| GH13G099371 | 1.3 | FANTOM5 ENCODE dbSUPER | 0.7 | +0.1 | 101 | 0.9 | ELF3 SOX13 TFAP4 ZNF384 RARA GATA4 NR2F6 HMG20B HLF FOXA3 | GPR183 DOCK9 UBAC2 GPR18 HMGB3P4 GC13P099385 |
| GH13G099353 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | -14.1 | -14081 | 9.0 | HDGF PKNOX1 FOXA2 ATF1 SIN3A TCF12 ZNF766 GATA2 FOS JUNB | UBAC2 GPR18 GPR183 DOCK9 CLYBL GC13P099358 HMGB3P4 |
| GH13G099379 | 1.7 | FANTOM5 Ensembl ENCODE dbSUPER | 0.4 | +10.2 | 10234 | 5.0 | HDGF PKNOX1 FOXA2 ZSCAN4 WRNIP1 ZNF121 RELB ETV6 IKZF2 CREM | UBAC2 GPR18 GPR183 MIR623 DOCK9 CLYBL GC13P099385 HMGB3P4 |
| GH13G099370 | 0.7 | ENCODE dbSUPER | 0.7 | -1.4 | -1410 | 1.1 | USF1 BHLHE40 | UBAC2 GPR183 GPR18 HMGB3P4 GC13P099358 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGB3P4 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGB3P4 Gene
- Chromosome:
- 13
- Start:
- 99,372,173 bp from pter
- End:
- 99,372,686 bp from pter
- Size:
- 514 bases
- Orientation:
- Plus strand
Genomic View for HMGB3P4 Gene
Genes around HMGB3P4 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 13q32.3 by Ensembl
- 13q32.3 by Entrez Gene
- 13q32.3 by HGNC
HMGB3P4 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGB3P4 Gene
Proteins for HMGB3P4 Gene
Post-translational modifications for HMGB3P4 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGB3P4
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB3P4
- Origene Custom Protein Services for HMGB3P4
- Search GeneTex for Proteins for HMGB3P4
Assay Products
No data available for DME Specific Peptides for HMGB3P4 Gene
Domains & Families for HMGB3P4 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P4 Gene
Function for HMGB3P4 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGB3P4
CRISPR Products
- Browse CRISPR knockouts for HMGB3P4
miRNA Products
- Search ViGene Biosciences for HMGB3P4
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB3P4
Cell Line Products
- Search ViGene Biosciences for HMGB3P4
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P4 Gene
Localization for HMGB3P4 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P4 Gene
Transcripts for HMGB3P4 Gene
mRNA/cDNA for HMGB3P4 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGB3P4
miRNA Products
- Search ViGene Biosciences for HMGB3P4
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB3P4
Flow Cytometry Products
Expression for HMGB3P4 Gene
NURSA nuclear receptor signaling pathways regulating expression of HMGB3P4 Gene:
HMGB3P4
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P4 Gene
Orthologs for HMGB3P4 Gene
No data available for Orthologs for HMGB3P4 Gene
Paralogs for HMGB3P4 Gene
No data available for Paralogs for HMGB3P4 Gene
Variants for HMGB3P4 Gene
Relevant External Links for HMGB3P4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGB3P4
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P4 Gene
Disorders for HMGB3P4 Gene
No disorders were found for HMGB3P4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P4 Gene
Publications for HMGB3P4 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGB3P4 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB3P4
- Origene Custom Protein Services for HMGB3P4
- Browse OriGene Inhibitory RNA Products For HMGB3P4
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGB3P4
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGB3P4
- GenScript: Custom all cDNA clones Services for HMGB3P4
- GenScript Custom Purified and Recombinant Proteins Services for HMGB3P4
- GenScript Custom Assay Services for HMGB3P4
- GenScript Custom overexpressing Cell Line Services for HMGB3P4
- Browse GenScript CRISPR for HMGB3P4
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HMGB3P4
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGB3P4
- VectorBuilder custom plasmid, inducible vectors for HMGB3P4
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGB3P4
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGB3P4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer