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Aliases for HMGB3P4 Gene

Subcategory (RNA class) for HMGB3P4 Gene

lncRNA

Aliases for HMGB3P4 Gene

  • High Mobility Group Box 3 Pseudogene 4 2 3 5
  • High-Mobility Group Box 3 Pseudogene 4 2

External Ids for HMGB3P4 Gene

ORGUL Members for HMGB3P4 Gene

Previous GeneCards Identifiers for HMGB3P4 Gene

  • GC00U931579
  • GC13P100025

Summaries for HMGB3P4 Gene

GeneCards Summary for HMGB3P4 Gene

HMGB3P4 (High Mobility Group Box 3 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P4 Gene

Genomics for HMGB3P4 Gene

Regulatory Elements for HMGB3P4 Gene

Enhancers for HMGB3P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G099373 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.3 3264 4.4 HDGF TBP PKNOX1 TBL1XR1 BMI1 ZNF207 RELB IKZF2 CREM CBFB GPR18 UBAC2 GPR183 HMGB3P4 GC13P099385
GH13G099371 1.3 FANTOM5 ENCODE dbSUPER 0.7 +0.1 101 0.9 ELF3 SOX13 TFAP4 ZNF384 RARA GATA4 NR2F6 HMG20B HLF FOXA3 GPR183 DOCK9 UBAC2 GPR18 HMGB3P4 GC13P099385
GH13G099353 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.1 -14081 9.0 HDGF PKNOX1 FOXA2 ATF1 SIN3A TCF12 ZNF766 GATA2 FOS JUNB UBAC2 GPR18 GPR183 DOCK9 CLYBL GC13P099358 HMGB3P4
GH13G099379 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.2 10234 5.0 HDGF PKNOX1 FOXA2 ZSCAN4 WRNIP1 ZNF121 RELB ETV6 IKZF2 CREM UBAC2 GPR18 GPR183 MIR623 DOCK9 CLYBL GC13P099385 HMGB3P4
GH13G099370 0.7 ENCODE dbSUPER 0.7 -1.4 -1410 1.1 USF1 BHLHE40 UBAC2 GPR183 GPR18 HMGB3P4 GC13P099358
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P4 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P4 Gene

Chromosome:
13
Start:
99,372,173 bp from pter
End:
99,372,686 bp from pter
Size:
514 bases
Orientation:
Plus strand

Genomic View for HMGB3P4 Gene

Genes around HMGB3P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P4 Gene

Proteins for HMGB3P4 Gene

Post-translational modifications for HMGB3P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P4 Gene

Domains & Families for HMGB3P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P4 Gene

Function for HMGB3P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P4 Gene

Localization for HMGB3P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P4 Gene

Pathways & Interactions for HMGB3P4 Gene

SuperPathways for HMGB3P4 Gene

No Data Available

Interacting Proteins for HMGB3P4 Gene

Gene Ontology (GO) - Biological Process for HMGB3P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P4 Gene

Drugs & Compounds for HMGB3P4 Gene

No Compound Related Data Available

Transcripts for HMGB3P4 Gene

mRNA/cDNA for HMGB3P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P4 Gene

No ASD Table

Relevant External Links for HMGB3P4 Gene

GeneLoc Exon Structure for
HMGB3P4
ECgene alternative splicing isoforms for
HMGB3P4

Expression for HMGB3P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB3P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P4 Gene:

HMGB3P4
genes like me logo Genes that share expression patterns with HMGB3P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P4 Gene

Orthologs for HMGB3P4 Gene

Evolution for HMGB3P4 Gene

ENSEMBL:
Gene Tree for HMGB3P4 (if available)
TreeFam:
Gene Tree for HMGB3P4 (if available)

No data available for Orthologs for HMGB3P4 Gene

Paralogs for HMGB3P4 Gene

No data available for Paralogs for HMGB3P4 Gene

Variants for HMGB3P4 Gene

Relevant External Links for HMGB3P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P4 Gene

Disorders for HMGB3P4 Gene

No disorders were found for HMGB3P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P4 Gene

Publications for HMGB3P4 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB3P4 Gene

Sources for HMGB3P4 Gene

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