Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMGB3P28 Gene

Aliases for HMGB3P28 Gene

  • High Mobility Group Box 3 Pseudogene 28 2 3
  • High-Mobility Group Box 3 Pseudogene 28 2
  • RP11-861E21.3 5

External Ids for HMGB3P28 Gene

Summaries for HMGB3P28 Gene

GeneCards Summary for HMGB3P28 Gene

HMGB3P28 (High Mobility Group Box 3 Pseudogene 28) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P28 Gene

Genomics for HMGB3P28 Gene

Regulatory Elements for HMGB3P28 Gene

Enhancers for HMGB3P28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G011854 2 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -592.2 -592217 6.9 FOXA2 PKNOX1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 SLC30A9 FOS CHMP1B ENSG00000267249 GNAL HMGB3P28 ENSG00000272703 PIR45381
GH18G013445 0.9 Ensembl dbSUPER 10.1 +995.1 995087 0.6 ZSCAN4 MNT PLRG1 ZFHX2 NONO IKZF1 KLF9 ZNF207 EGR2 ZNF519 ENSG00000266969 ENSG00000267756 HMGB3P28 GC18P013454 LDLRAD4-AS1
GH18G012460 0.8 ENCODE 0.4 +10.7 10735 1.9 ELF3 ESRRA FOXA2 ZNF792 SAP130 JUN ARID4B CEBPG ZNF48 RAD21 ENSG00000267199 PRELID3A RNU7-129P SPIRE1 HMGB3P28 GC18P012513
GH18G012471 0.4 FANTOM5 0.3 +20.8 20837 0.3 PRELID3A RNU7-129P PSMG2 HMGB3P28 GC18P012513
GH18G012455 0.2 ENCODE 0.4 +5.1 5127 0.8 PRELID3A RNU7-129P SPIRE1 ENSG00000267199 HMGB3P28 GC18P012513
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P28 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P28 Gene

Chromosome:
18
Start:
12,450,414 bp from pter
End:
12,451,072 bp from pter
Size:
659 bases
Orientation:
Plus strand

Genomic View for HMGB3P28 Gene

Genes around HMGB3P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P28 Gene

Proteins for HMGB3P28 Gene

Post-translational modifications for HMGB3P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P28 Gene

Domains & Families for HMGB3P28 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P28 Gene

Function for HMGB3P28 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P28 Gene

Localization for HMGB3P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P28 Gene

Pathways & Interactions for HMGB3P28 Gene

SuperPathways for HMGB3P28 Gene

No Data Available

Interacting Proteins for HMGB3P28 Gene

Gene Ontology (GO) - Biological Process for HMGB3P28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P28 Gene

Drugs & Compounds for HMGB3P28 Gene

No Compound Related Data Available

Transcripts for HMGB3P28 Gene

mRNA/cDNA for HMGB3P28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P28 Gene

No ASD Table

Relevant External Links for HMGB3P28 Gene

GeneLoc Exon Structure for
HMGB3P28
ECgene alternative splicing isoforms for
HMGB3P28

Expression for HMGB3P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB3P28 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P28 Gene:

HMGB3P28
genes like me logo Genes that share expression patterns with HMGB3P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P28 Gene

Orthologs for HMGB3P28 Gene

Evolution for HMGB3P28 Gene

ENSEMBL:
Gene Tree for HMGB3P28 (if available)
TreeFam:
Gene Tree for HMGB3P28 (if available)

No data available for Orthologs for HMGB3P28 Gene

Paralogs for HMGB3P28 Gene

No data available for Paralogs for HMGB3P28 Gene

Variants for HMGB3P28 Gene

Relevant External Links for HMGB3P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P28 Gene

Disorders for HMGB3P28 Gene

No disorders were found for HMGB3P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P28 Gene

Publications for HMGB3P28 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB3P28 Gene

Sources for HMGB3P28 Gene

Content
Loading form....