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HMGB3P27 Gene(Pseudogene)

High Mobility Group Box 3 Pseudogene 27

GCID:
GC17P042642
GIFtS:
15
Genes Participants
UDN Logo

Aliases for HMGB3P27 Gene

Aliases for HMGB3P27 Gene

  • High Mobility Group Box 3 Pseudogene 27 2 3 5
  • High-Mobility Group Box 3 Pseudogene 27 2

External Ids for HMGB3P27 Gene

Previous GeneCards Identifiers for HMGB3P27 Gene

  • GC17P040801
  • GC17P040794

Summaries for HMGB3P27 Gene

GeneCards Summary for HMGB3P27 Gene

HMGB3P27 (High Mobility Group Box 3 Pseudogene 27) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P27 Gene

Genomics for HMGB3P27 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGB3P27 Gene

Enhancers for HMGB3P27 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G042653 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.8 5785 1.4 SIN3A ZNF384 RAD21 E2F1 ZNF121 POLR2A PRDM10 ZNF263 MIER1 L3MBTL2 TUBG2 HMGB3P27
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P27 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P27 Gene

Chromosome:
17
Start:
42,648,154 bp from pter
End:
42,648,738 bp from pter
Size:
585 bases
Orientation:
Plus strand

Genomic View for HMGB3P27 Gene

Genes around HMGB3P27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P27 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGB3P27 Gene

Proteins for HMGB3P27 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGB3P27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P27 Gene

Domains & Families for HMGB3P27 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P27 Gene

Function for HMGB3P27 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for HMGB3P27 Gene

GenomeRNAi human phenotypes for HMGB3P27:
genes like me logo Genes that share phenotypes with HMGB3P27: view

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P27 Gene

Localization for HMGB3P27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P27 Gene

Pathways & Interactions for HMGB3P27 Gene

SuperPathways for HMGB3P27 Gene

PathCards logo More details on SuperPathways for HMGB3P27
No Data Available

Interacting Proteins for HMGB3P27 Gene

Gene Ontology (GO) - Biological Process for HMGB3P27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P27 Gene

Drugs & Compounds for HMGB3P27 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGB3P27 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGB3P27 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P27 Gene

No ASD Table

Relevant External Links for HMGB3P27 Gene

GeneLoc Exon Structure for
HMGB3P27
ECgene alternative splicing isoforms for
HMGB3P27

Expression for HMGB3P27 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB3P27 Gene

mRNA expression in normal human tissues for HMGB3P27 Gene
mRNA expression by GTEx for HMGB3P27 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB3P27 Gene

This gene is overexpressed in Pancreas (x28.5) and Stomach (x21.0).

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P27 Gene:

HMGB3P27
genes like me logo Genes that share expression patterns with HMGB3P27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P27 Gene

Orthologs for HMGB3P27 Gene

Evolution for HMGB3P27 Gene

ENSEMBL:
Gene Tree for HMGB3P27 (if available)
TreeFam:
Gene Tree for HMGB3P27 (if available)

No data available for Orthologs for HMGB3P27 Gene

Paralogs for HMGB3P27 Gene

No data available for Paralogs for HMGB3P27 Gene

Variants for HMGB3P27 Gene

Relevant External Links for HMGB3P27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P27 Gene

Disorders for HMGB3P27 Gene

No disorders were found for HMGB3P27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P27 Gene

Publications for HMGB3P27 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
  2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 64

Products for HMGB3P27 Gene

Sources for HMGB3P27 Gene

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