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Aliases for HMGB3P22 Gene

Aliases for HMGB3P22 Gene

  • High Mobility Group Box 3 Pseudogene 22 2 3 5
  • High-Mobility Group Box 3 Pseudogene 22 2

External Ids for HMGB3P22 Gene

Previous GeneCards Identifiers for HMGB3P22 Gene

  • GC05P179107

Summaries for HMGB3P22 Gene

GeneCards Summary for HMGB3P22 Gene

HMGB3P22 (High Mobility Group Box 3 Pseudogene 22) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P22 Gene

Genomics for HMGB3P22 Gene

Regulatory Elements for HMGB3P22 Gene

Enhancers for HMGB3P22 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F179758 1.3 Ensembl ENCODE 11.4 +83.8 83770 8.4 HDGF PKNOX1 MLX ARID4B DMAP1 ZNF2 ZNF143 FOS ZNF263 SP5 MAML1 CANX MGAT4B ZNF879 LOC100996419 ZNF354C LTC4S MIR1229 SQSTM1 ZFP2
GH05F179753 1.1 Ensembl ENCODE 10.8 +75.7 75675 1.8 ELF3 ARID4B RAD21 RARA MIXL1 THAP11 PAF1 CEBPB PPARG SSRP1 MAML1 LTC4S MIR1229 SQSTM1 MGAT4B CBY3 CANX HMGB3P22 TBC1D9B MRNIP
GH05F179756 0.6 Ensembl 10.7 +77.9 77869 0.2 OSR2 GLIS2 GLIS1 FEZF1 ZNF843 TCF7L2 MAML1 LTC4S MIR1229 SQSTM1 MGAT4B CBY3 CANX HMGB3P22 TBC1D9B MRNIP
GH05F179705 0.4 ENCODE 13.4 +26.3 26253 0.1 NR2F1 KDM1A CANX HMGB3P22 MAML1 LTC4S MIR1229 SQSTM1 MGAT4B GC05M179695 GC05M179696
GH05F179709 0.2 Ensembl 11.9 +30.7 30669 0.2 MAML1 CBY3 CANX HMGB3P22 LOC101928445 RUFY1 MRNIP TBC1D9B GC05M179695 GC05M179730
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P22 on UCSC Golden Path with GeneCards custom track

Promoters for HMGB3P22 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001298284 -632 2001 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for HMGB3P22 Gene

Chromosome:
5
Start:
179,679,032 bp from pter
End:
179,694,786 bp from pter
Size:
15,755 bases
Orientation:
Plus strand

Genomic View for HMGB3P22 Gene

Genes around HMGB3P22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P22 Gene

Proteins for HMGB3P22 Gene

Post-translational modifications for HMGB3P22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P22 Gene

Domains & Families for HMGB3P22 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P22 Gene

Function for HMGB3P22 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P22 Gene

Localization for HMGB3P22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P22 Gene

Pathways & Interactions for HMGB3P22 Gene

SuperPathways for HMGB3P22 Gene

No Data Available

Interacting Proteins for HMGB3P22 Gene

Gene Ontology (GO) - Biological Process for HMGB3P22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P22 Gene

Transcripts for HMGB3P22 Gene

mRNA/cDNA for HMGB3P22 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P22 Gene

No ASD Table

Relevant External Links for HMGB3P22 Gene

GeneLoc Exon Structure for
HMGB3P22
ECgene alternative splicing isoforms for
HMGB3P22

Expression for HMGB3P22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB3P22 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB3P22 Gene

This gene is overexpressed in Testis (x8.4) and Brain - Spinal cord (cervical c-1) (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P22 Gene:

HMGB3P22
genes like me logo Genes that share expression patterns with HMGB3P22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGB3P22 Gene

Orthologs for HMGB3P22 Gene

Evolution for HMGB3P22 Gene

ENSEMBL:
Gene Tree for HMGB3P22 (if available)
TreeFam:
Gene Tree for HMGB3P22 (if available)

No data available for Orthologs for HMGB3P22 Gene

Paralogs for HMGB3P22 Gene

No data available for Paralogs for HMGB3P22 Gene

Variants for HMGB3P22 Gene

Relevant External Links for HMGB3P22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P22 Gene

Disorders for HMGB3P22 Gene

No disorders were found for HMGB3P22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P22 Gene

Publications for HMGB3P22 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB3P22 Gene

Sources for HMGB3P22 Gene

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