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Aliases for HMGB3P20 Gene

Aliases for HMGB3P20 Gene

  • High Mobility Group Box 3 Pseudogene 20 2 3 5
  • High-Mobility Group Box 3 Pseudogene 20 2

External Ids for HMGB3P20 Gene

Previous GeneCards Identifiers for HMGB3P20 Gene

  • GC07M027073
  • GC07M027023

Summaries for HMGB3P20 Gene

GeneCards Summary for HMGB3P20 Gene

HMGB3P20 (High Mobility Group Box 3 Pseudogene 20) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P20 Gene

Genomics for HMGB3P20 Gene

Regulatory Elements for HMGB3P20 Gene

Enhancers for HMGB3P20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F026862 1.1 ENCODE 16.3 +119.3 119345 3.1 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 HOTAIRM1 HMGB3P20 TPM3P4 PSMC1P2 RPL23P7 HOXA-AS3 HOXA4 HOXA3 HOXA6 HOXA5
GH07F027095 2.8 VISTA FANTOM5 Ensembl ENCODE 16.2 -154.7 -154737 86.3 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 HOTAIRM1 HOXA-AS2 HOXA10-AS HOXA2 HOXA9 TPM3P4 HMGB3P20 PSMC1P2 RPL23P7 HOXA11-AS
GH07F026372 1.5 ENCODE 16.2 +608.5 608467 5.5 HDGF PKNOX1 ARID4B FEZF1 ZNF2 ZNF302 ZNF143 ZNF548 SP3 REST RPL23P7 TPM3P4 HMGB3P20 ENSG00000227386 HOXA10-AS HOXA9 MIR196B CBX3 HNRNPA2B1 KIAA0087
GH07F026333 0.9 Ensembl ENCODE 16.2 +647.7 647707 4.1 HDGF ARID4B GLI4 FEZF1 ZNF2 ZNF121 GLIS2 ZNF302 ZNF143 KLF7 RPL23P7 HMGB3P20 TPM3P4 ENSG00000227386 KIAA0087 HOTAIRM1 HOXA11-AS LOC105375304 SNX10
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HMGB3P20 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P20 Gene

Chromosome:
7
Start:
26,982,604 bp from pter
End:
26,983,459 bp from pter
Size:
856 bases
Orientation:
Minus strand

Genomic View for HMGB3P20 Gene

Genes around HMGB3P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P20 Gene

Proteins for HMGB3P20 Gene

Post-translational modifications for HMGB3P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P20 Gene

Domains & Families for HMGB3P20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P20 Gene

Function for HMGB3P20 Gene

Phenotypes for HMGB3P20 Gene

GenomeRNAi human phenotypes for HMGB3P20:
genes like me logo Genes that share phenotypes with HMGB3P20: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P20 Gene

Localization for HMGB3P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P20 Gene

Pathways & Interactions for HMGB3P20 Gene

SuperPathways for HMGB3P20 Gene

No Data Available

Interacting Proteins for HMGB3P20 Gene

Gene Ontology (GO) - Biological Process for HMGB3P20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P20 Gene

Transcripts for HMGB3P20 Gene

mRNA/cDNA for HMGB3P20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P20 Gene

No ASD Table

Relevant External Links for HMGB3P20 Gene

GeneLoc Exon Structure for
HMGB3P20
ECgene alternative splicing isoforms for
HMGB3P20

Expression for HMGB3P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB3P20 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB3P20 Gene

This gene is overexpressed in Testis (x43.6) and Cervix - Ectocervix (x9.4).

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P20 Gene:

HMGB3P20
genes like me logo Genes that share expression patterns with HMGB3P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGB3P20 Gene

Orthologs for HMGB3P20 Gene

Evolution for HMGB3P20 Gene

ENSEMBL:
Gene Tree for HMGB3P20 (if available)
TreeFam:
Gene Tree for HMGB3P20 (if available)

No data available for Orthologs for HMGB3P20 Gene

Paralogs for HMGB3P20 Gene

No data available for Paralogs for HMGB3P20 Gene

Variants for HMGB3P20 Gene

Relevant External Links for HMGB3P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P20 Gene

Disorders for HMGB3P20 Gene

No disorders were found for HMGB3P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P20 Gene

Publications for HMGB3P20 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB3P20 Gene

Sources for HMGB3P20 Gene

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