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HMGB3P19 Gene(Pseudogene)

High Mobility Group Box 3 Pseudogene 19

GCID:
GC06M153938
GIFtS:
12
Genes Participants
UDN Logo

Aliases for HMGB3P19 Gene

Aliases for HMGB3P19 Gene

  • High Mobility Group Box 3 Pseudogene 19 2 3 5
  • High-Mobility Group Box 3 Pseudogene 19 2

External Ids for HMGB3P19 Gene

Previous GeneCards Identifiers for HMGB3P19 Gene

  • GC06M154259

Summaries for HMGB3P19 Gene

GeneCards Summary for HMGB3P19 Gene

HMGB3P19 (High Mobility Group Box 3 Pseudogene 19) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P19 Gene

Genomics for HMGB3P19 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGB3P19 Gene

Enhancers for HMGB3P19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G153941 0.4 ENCODE 0.7 -2.9 -2856 0.3 PKNOX1 HMGB3P19 OPRM1
GH06G153947 0.6 ENCODE 0.4 -8.9 -8886 0.1 CTCF TEAD4 TRIM22 ZNF143 RAD21 TEAD3 OPRM1 HMGB3P19
GH06G153959 0.2 ENCODE 0.4 -20.0 -19956 0.2 HMGB3P19 OPRM1
GH06G153960 0.2 ENCODE 0.3 -21.4 -21419 1.1 HMGB3P19 OPRM1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P19 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P19 Gene

Chromosome:
6
Start:
153,938,261 bp from pter
End:
153,939,125 bp from pter
Size:
865 bases
Orientation:
Minus strand

Genomic View for HMGB3P19 Gene

Genes around HMGB3P19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P19 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGB3P19 Gene

Proteins for HMGB3P19 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGB3P19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P19 Gene

Domains & Families for HMGB3P19 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P19 Gene

Function for HMGB3P19 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P19 Gene

Localization for HMGB3P19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P19 Gene

Pathways & Interactions for HMGB3P19 Gene

SuperPathways for HMGB3P19 Gene

PathCards logo More details on SuperPathways for HMGB3P19
No Data Available

Interacting Proteins for HMGB3P19 Gene

Gene Ontology (GO) - Biological Process for HMGB3P19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P19 Gene

Drugs & Compounds for HMGB3P19 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGB3P19 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGB3P19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P19 Gene

No ASD Table

Relevant External Links for HMGB3P19 Gene

GeneLoc Exon Structure for
HMGB3P19
ECgene alternative splicing isoforms for
HMGB3P19

Expression for HMGB3P19 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB3P19 Gene

mRNA expression in normal human tissues for HMGB3P19 Gene
mRNA expression by BioGPS for HMGB3P19 GenemRNA expression by GTEx for HMGB3P19 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P19 Gene:

HMGB3P19
genes like me logo Genes that share expression patterns with HMGB3P19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P19 Gene

Orthologs for HMGB3P19 Gene

Evolution for HMGB3P19 Gene

ENSEMBL:
Gene Tree for HMGB3P19 (if available)
TreeFam:
Gene Tree for HMGB3P19 (if available)

No data available for Orthologs for HMGB3P19 Gene

Paralogs for HMGB3P19 Gene

No data available for Paralogs for HMGB3P19 Gene

Variants for HMGB3P19 Gene

Relevant External Links for HMGB3P19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P19 Gene

Disorders for HMGB3P19 Gene

No disorders were found for HMGB3P19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P19 Gene

Publications for HMGB3P19 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB3P19 Gene

Sources for HMGB3P19 Gene

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