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Aliases for HMGB3P17 Gene

Subcategory (RNA class) for HMGB3P17 Gene

lncRNA

Aliases for HMGB3P17 Gene

  • High Mobility Group Box 3 Pseudogene 17 2 3 5
  • High-Mobility Group Box 3 Pseudogene 17 2

External Ids for HMGB3P17 Gene

ORGUL Members for HMGB3P17 Gene

Previous GeneCards Identifiers for HMGB3P17 Gene

  • GC05M122805

Summaries for HMGB3P17 Gene

GeneCards Summary for HMGB3P17 Gene

HMGB3P17 (High Mobility Group Box 3 Pseudogene 17) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P17 Gene

Genomics for HMGB3P17 Gene

Regulatory Elements for HMGB3P17 Gene

Enhancers for HMGB3P17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G123459 1.5 FANTOM5 Ensembl ENCODE 0.4 +8.8 8791 2.1 HDAC1 HDGF PKNOX1 ATF1 ZNF133 BRCA1 ZNF2 ZNF121 GATA2 FOS KRT8P33 CEP120 HMGB3P17
GH05G123428 1.4 FANTOM5 Ensembl ENCODE 0.3 +39.8 39787 1.9 TBP PKNOX1 FEZF1 RAD21 YY1 FOS CEBPB ATF4 CEBPA STAT3 CSNK1G3 CEP120 HMGB3P17
GH05G123455 0.8 ENCODE 0.4 +13.2 13167 1.4 CTCF PKNOX1 TAF1 MAX CEBPG RAD21 YY1 ZNF316 HNF4G NFE2 HMGB3P17 CEP120
GH05G123439 1 ENCODE 0.3 +30.1 30091 0.1 SIN3A ARID4B DMAP1 ZNF2 YY1 ZNF207 SP3 SP5 MXD4 REST CEP120 HMGB3P17
GH05G123438 0.8 ENCODE 0.3 +30.4 30368 0.2 JUN DMAP1 ZNF48 EGR1 ZBTB48 ETV6 FOS CREM THAP11 SP3 CEP120 HMGB3P17
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P17 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P17 Gene

Chromosome:
5
Start:
123,468,598 bp from pter
End:
123,469,429 bp from pter
Size:
832 bases
Orientation:
Minus strand

Genomic View for HMGB3P17 Gene

Genes around HMGB3P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P17 Gene

Proteins for HMGB3P17 Gene

Post-translational modifications for HMGB3P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P17 Gene

Domains & Families for HMGB3P17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P17 Gene

Function for HMGB3P17 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P17 Gene

Localization for HMGB3P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P17 Gene

Pathways & Interactions for HMGB3P17 Gene

SuperPathways for HMGB3P17 Gene

No Data Available

Interacting Proteins for HMGB3P17 Gene

Gene Ontology (GO) - Biological Process for HMGB3P17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P17 Gene

Drugs & Compounds for HMGB3P17 Gene

No Compound Related Data Available

Transcripts for HMGB3P17 Gene

mRNA/cDNA for HMGB3P17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P17 Gene

No ASD Table

Relevant External Links for HMGB3P17 Gene

GeneLoc Exon Structure for
HMGB3P17
ECgene alternative splicing isoforms for
HMGB3P17

Expression for HMGB3P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB3P17 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P17 Gene:

HMGB3P17
genes like me logo Genes that share expression patterns with HMGB3P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P17 Gene

Orthologs for HMGB3P17 Gene

Evolution for HMGB3P17 Gene

ENSEMBL:
Gene Tree for HMGB3P17 (if available)
TreeFam:
Gene Tree for HMGB3P17 (if available)

No data available for Orthologs for HMGB3P17 Gene

Paralogs for HMGB3P17 Gene

No data available for Paralogs for HMGB3P17 Gene

Variants for HMGB3P17 Gene

Relevant External Links for HMGB3P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P17 Gene

Disorders for HMGB3P17 Gene

No disorders were found for HMGB3P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P17 Gene

Publications for HMGB3P17 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB3P17 Gene

Sources for HMGB3P17 Gene

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