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Aliases for HMGB3P1 Gene

Aliases for HMGB3P1 Gene

  • High Mobility Group Box 3 Pseudogene 1 2 3 5
  • High-Mobility Group Box 3-Like 1 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 4-Like 2
  • High-Mobility Group Box 3 Pseudogene 1 2
  • High-Mobility Group Box Pseudogene 1 3
  • DJ18C9.3 3
  • HMGB3L1 3
  • HMG4L 3

External Ids for HMGB3P1 Gene

Previous HGNC Symbols for HMGB3P1 Gene

  • HMG4L
  • HMGB3L1

Previous GeneCards Identifiers for HMGB3P1 Gene

  • GC20M033422

Summaries for HMGB3P1 Gene

GeneCards Summary for HMGB3P1 Gene

HMGB3P1 (High Mobility Group Box 3 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P1 Gene

Genomics for HMGB3P1 Gene

Regulatory Elements for HMGB3P1 Gene

Enhancers for HMGB3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F034834 0.6 Ensembl 0.8 -0.2 -239 0.2 ZNF202 CTCF MAZ ZNF654 SMC3 ZBTB7A RAD21 RBM12 NCOA6 RPL36P4 MYH7B MIR499A MMP24 ENSG00000272945 EDEM2 MMP24-AS1 EIF6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P1 Gene

34,833,575 bp from pter
34,834,462 bp from pter
888 bases
Minus strand

Genomic View for HMGB3P1 Gene

Genes around HMGB3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P1 Gene

Proteins for HMGB3P1 Gene

Post-translational modifications for HMGB3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P1 Gene

Domains & Families for HMGB3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P1 Gene

Function for HMGB3P1 Gene

genes like me logo Genes that share phenotypes with HMGB3P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P1 Gene

Localization for HMGB3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P1 Gene

Pathways & Interactions for HMGB3P1 Gene

SuperPathways for HMGB3P1 Gene

No Data Available

Interacting Proteins for HMGB3P1 Gene

Gene Ontology (GO) - Biological Process for HMGB3P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HMGB3P1 Gene

Transcripts for HMGB3P1 Gene

mRNA/cDNA for HMGB3P1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P1 Gene

No ASD Table

Relevant External Links for HMGB3P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HMGB3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB3P1 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB3P1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x13.7) and Brain - Cerebellum (x12.6).

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P1 Gene:


SOURCE GeneReport for Unigene cluster for HMGB3P1 Gene:

genes like me logo Genes that share expression patterns with HMGB3P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGB3P1 Gene

Orthologs for HMGB3P1 Gene

Evolution for HMGB3P1 Gene

Gene Tree for HMGB3P1 (if available)
Gene Tree for HMGB3P1 (if available)

No data available for Orthologs for HMGB3P1 Gene

Paralogs for HMGB3P1 Gene

No data available for Paralogs for HMGB3P1 Gene

Variants for HMGB3P1 Gene

Sequence variations from dbSNP and Humsavar for HMGB3P1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111316628 -- 34,833,547(+) TTTTT(-/T)ATAGG downstream-variant-500B
rs113802846 -- 34,834,645(+) GAGGA(-/G)GGGGG upstream-variant-2KB
rs115800058 -- 34,834,398(+) TGCAC(A/G)TCTGC nc-transcript-variant
rs138239326 -- 34,833,408(+) ATAAT(A/G)AAACA downstream-variant-500B
rs139285343 -- 34,834,156(+) GGCTA(A/G)TTTTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HMGB3P1 Gene

Variant ID Type Subtype PubMed ID
nsv1055447 CNV loss 25217958
nsv964393 CNV duplication 23825009

Relevant External Links for HMGB3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMGB3P1 Gene

Disorders for HMGB3P1 Gene

Relevant External Links for HMGB3P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HMGB3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGB3P1 Gene

Publications for HMGB3P1 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HMGB3P1 Gene

Sources for HMGB3P1 Gene

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