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Aliases for HMGB3P1 Gene

Aliases for HMGB3P1 Gene

  • High Mobility Group Box 3 Pseudogene 1 2 3
  • High-Mobility Group Box 3 Pseudogene 1 2 3
  • High-Mobility Group Box 3-Like 1 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 4-Like 2
  • High-Mobility Group Box Pseudogene 1 3
  • DJ18C9.3 3
  • HMGB3L1 3
  • HMG4L 3

External Ids for HMGB3P1 Gene

Previous Symbols for HMGB3P1 Gene

  • HMG4L
  • HMGB3L1

Summaries for HMGB3P1 Gene

GeneCards Summary for HMGB3P1 Gene

HMGB3P1 (High Mobility Group Box 3 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P1 Gene

Genomics for HMGB3P1 Gene

Genomic Location for HMGB3P1 Gene

Start:
34,833,575 bp from pter
End:
34,834,462 bp from pter
Size:
888 bases
Orientation:
Minus strand

Genomic View for HMGB3P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HMGB3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P1 Gene

No data available for Regulatory Elements for HMGB3P1 Gene

Proteins for HMGB3P1 Gene

Post-translational modifications for HMGB3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P1 Gene

Domains for HMGB3P1 Gene

Gene Families for HMGB3P1 Gene

HGNC:
  • HMGBP :High mobility group / HMG-box pseudogenes
genes like me logo Genes that share domains with HMGB3P1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HMGB3P1 Gene

Function for HMGB3P1 Gene

Phenotypes for HMGB3P1 Gene

GenomeRNAi human phenotypes for HMGB3P1:
genes like me logo Genes that share phenotypes with HMGB3P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HMGB3P1 Gene

Localization for HMGB3P1 Gene

No data available for Gene Ontology (GO) - Cellular Components for HMGB3P1 Gene

Pathways for HMGB3P1 Gene

SuperPathways for HMGB3P1 Gene

No Data Available

Interacting Proteins for HMGB3P1 Gene

Gene Ontology (GO) - Biological Process for HMGB3P1 Gene

None

No data available for Pathways by source for HMGB3P1 Gene

Transcripts for HMGB3P1 Gene

mRNA/cDNA for HMGB3P1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P1 Gene

No ASD Table

Relevant External Links for HMGB3P1 Gene

GeneLoc Exon Structure for
HMGB3P1
ECgene alternative splicing isoforms for
HMGB3P1

Expression for HMGB3P1 Gene

mRNA expression in normal human tissues for HMGB3P1 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB3P1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (13.7) and Brain - Cerebellum (12.6).

SOURCE GeneReport for Unigene cluster for HMGB3P1 Gene Hs.558624

genes like me logo Genes that share expressions with HMGB3P1: view

Orthologs for HMGB3P1 Gene

Evolution for HMGB3P1 Gene

ENSEMBL:
Gene Tree for HMGB3P1 (if available)
TreeFam:
Gene Tree for HMGB3P1 (if available)

No data available for Orthologs for HMGB3P1 Gene

Paralogs for HMGB3P1 Gene

No data available for Paralogs for HMGB3P1 Gene

Variants for HMGB3P1 Gene

Sequence variations from dbSNP and Humsavar for HMGB3P1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs2024635 -- 34,834,811(+) ataca(A/G)aaatt upstream-variant-2KB
rs6087636 -- 34,836,022(+) cacca(G/T)gcccg upstream-variant-2KB
rs8122889 -- 34,836,348(+) ttttt(A/G)tattt upstream-variant-2KB
rs34586951 -- 34,833,788(+) TTTTT(-/T)GCCAC nc-transcript-variant
rs34999224 -- 34,833,149(+) AACAA(-/C)GCAAT downstream-variant-500B

Relevant External Links for HMGB3P1 Gene

HapMap Linkage Disequilibrium report
HMGB3P1

No data available for Structural Variations from Database of Genomic Variants (DGV) for HMGB3P1 Gene

Disorders for HMGB3P1 Gene

No disorders were found for HMGB3P1 Gene.

No data available for UniProtKB/Swiss-Prot for HMGB3P1 Gene

Publications for HMGB3P1 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3
  2. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for HMGB3P1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HMGB3P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HMGB3P1
    • Block miRNA regulation of HMGB3P1 using miScript Target Protectors

    Sources for HMGB3P1 Gene

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