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Aliases for HMGB3P1 Gene

Aliases for HMGB3P1 Gene

  • High Mobility Group Box 3 Pseudogene 1 2 3 5
  • High-Mobility Group Box 3 Pseudogene 1 2 3
  • High-Mobility Group Box 3-Like 1 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 4-Like 2
  • High-Mobility Group Box Pseudogene 1 3
  • DJ18C9.3 3
  • HMGB3L1 3
  • HMG4L 3

External Ids for HMGB3P1 Gene

Previous HGNC Symbols for HMGB3P1 Gene

  • HMG4L
  • HMGB3L1

Previous GeneCards Identifiers for HMGB3P1 Gene

  • GC20M033422

Summaries for HMGB3P1 Gene

GeneCards Summary for HMGB3P1 Gene

HMGB3P1 (High Mobility Group Box 3 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P1 Gene

Genomics for HMGB3P1 Gene

Regulatory Elements for HMGB3P1 Gene

Enhancers for HMGB3P1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HMGB3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB3P1 Gene

Chromosome:
20
Start:
34,833,575 bp from pter
End:
34,834,462 bp from pter
Size:
888 bases
Orientation:
Minus strand

Genomic View for HMGB3P1 Gene

Genes around HMGB3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P1 Gene

Proteins for HMGB3P1 Gene

Post-translational modifications for HMGB3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P1 Gene

Domains & Families for HMGB3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P1 Gene

Function for HMGB3P1 Gene

genes like me logo Genes that share phenotypes with HMGB3P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P1 Gene

Localization for HMGB3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB3P1 Gene

Pathways & Interactions for HMGB3P1 Gene

SuperPathways for HMGB3P1 Gene

No Data Available

Interacting Proteins for HMGB3P1 Gene

Gene Ontology (GO) - Biological Process for HMGB3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P1 Gene

Drugs & Compounds for HMGB3P1 Gene

No Compound Related Data Available

Transcripts for HMGB3P1 Gene

mRNA/cDNA for HMGB3P1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P1 Gene

No ASD Table

Relevant External Links for HMGB3P1 Gene

GeneLoc Exon Structure for
HMGB3P1
ECgene alternative splicing isoforms for
HMGB3P1

Expression for HMGB3P1 Gene

mRNA expression in normal human tissues for HMGB3P1 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB3P1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x13.7) and Brain - Cerebellum (x12.6).

SOURCE GeneReport for Unigene cluster for HMGB3P1 Gene Hs.558624

genes like me logo Genes that share expression patterns with HMGB3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HMGB3P1 Gene

Orthologs for HMGB3P1 Gene

Evolution for HMGB3P1 Gene

ENSEMBL:
Gene Tree for HMGB3P1 (if available)
TreeFam:
Gene Tree for HMGB3P1 (if available)

No data available for Orthologs for HMGB3P1 Gene

Paralogs for HMGB3P1 Gene

No data available for Paralogs for HMGB3P1 Gene

Variants for HMGB3P1 Gene

Sequence variations from dbSNP and Humsavar for HMGB3P1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs2024635 -- 34,834,811(+) ataca(A/G)aaatt upstream-variant-2KB
rs6087636 -- 34,836,022(+) cacca(G/T)gcccg upstream-variant-2KB
rs34586951 -- 34,833,788(+) TTTTT(-/T)GCCAC nc-transcript-variant
rs8122889 -- 34,836,348(+) ttttt(A/G)tattt upstream-variant-2KB
rs34999224 -- 34,833,149(+) AACAA(-/C)GCAAT downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for HMGB3P1 Gene

Disorders for HMGB3P1 Gene

Relevant External Links for HMGB3P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMGB3P1

No disorders were found for HMGB3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGB3P1 Gene

Publications for HMGB3P1 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for HMGB3P1 Gene

Sources for HMGB3P1 Gene

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