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Aliases for HMGB1P6 Gene

Aliases for HMGB1P6 Gene

  • High Mobility Group Box 1 Pseudogene 6 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 6 Pseudogene 2 3
  • High-Mobility Group Box 1 Pseudogene 6 2 3
  • High-Mobility Group Box 1-Like 6 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 6 2
  • HMGB1L6 3
  • HMG1L6 3

External Ids for HMGB1P6 Gene

Previous HGNC Symbols for HMGB1P6 Gene

  • HMG1L6
  • HMGB1L6

Previous GeneCards Identifiers for HMGB1P6 Gene

  • GC15M071456

Summaries for HMGB1P6 Gene

GeneCards Summary for HMGB1P6 Gene

HMGB1P6 (High Mobility Group Box 1 Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P6 Gene

Genomics for HMGB1P6 Gene

Genomic Location for HMGB1P6 Gene

Start:
71,163,672 bp from pter
End:
71,165,512 bp from pter
Size:
1,841 bases
Orientation:
Minus strand

Genomic View for HMGB1P6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HMGB1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P6 Gene

No data available for Regulatory Elements for HMGB1P6 Gene

Proteins for HMGB1P6 Gene

Post-translational modifications for HMGB1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P6 Gene

Domains for HMGB1P6 Gene

Gene Families for HMGB1P6 Gene

HGNC:
  • HMGBP :High mobility group / HMG-box pseudogenes

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMGB1P6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P6 Gene

Function for HMGB1P6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HMGB1P6 Gene

Localization for HMGB1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P6 Gene

Pathways for HMGB1P6 Gene

SuperPathways for HMGB1P6 Gene

No Data Available

Interacting Proteins for HMGB1P6 Gene

Gene Ontology (GO) - Biological Process for HMGB1P6 Gene

None

No data available for Pathways by source for HMGB1P6 Gene

Transcripts for HMGB1P6 Gene

mRNA/cDNA for HMGB1P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P6 Gene

No ASD Table

Relevant External Links for HMGB1P6 Gene

GeneLoc Exon Structure for
HMGB1P6
ECgene alternative splicing isoforms for
HMGB1P6

Expression for HMGB1P6 Gene

mRNA expression in normal human tissues for HMGB1P6 Gene

genes like me logo Genes that share expressions with HMGB1P6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for HMGB1P6 Gene

Orthologs for HMGB1P6 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for HMGB1P6 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Hmgb1-ps1 16
Species with no ortholog for HMGB1P6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HMGB1P6 Gene

ENSEMBL:
Gene Tree for HMGB1P6 (if available)
TreeFam:
Gene Tree for HMGB1P6 (if available)

Paralogs for HMGB1P6 Gene

No data available for Paralogs for HMGB1P6 Gene

Variants for HMGB1P6 Gene

Relevant External Links for HMGB1P6 Gene

HapMap Linkage Disequilibrium report
HMGB1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for HMGB1P6 Gene

Disorders for HMGB1P6 Gene

No disorders were found for HMGB1P6 Gene.

No data available for UniProtKB/Swiss-Prot for HMGB1P6 Gene

Publications for HMGB1P6 Gene

  1. Mapping and molecular characterization of five HMG1-related DNA sequences. (PMID: 9925949) Rogalla P. … Bullerdiek J. (Cytogenet. Cell Genet. 1998) 2 3
  2. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3

Products for HMGB1P6 Gene

Sources for HMGB1P6 Gene

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