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Aliases for HMGB1P6 Gene

Aliases for HMGB1P6 Gene

  • High Mobility Group Box 1 Pseudogene 6 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 6 Pseudogene 2 3
  • High-Mobility Group Box 1-Like 6 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 6 2
  • High-Mobility Group Box 1 Pseudogene 6 2
  • HMGB1L6 3
  • HMG1L6 3

External Ids for HMGB1P6 Gene

Previous HGNC Symbols for HMGB1P6 Gene

  • HMG1L6
  • HMGB1L6

Previous GeneCards Identifiers for HMGB1P6 Gene

  • GC15M071456

Summaries for HMGB1P6 Gene

GeneCards Summary for HMGB1P6 Gene

HMGB1P6 (High Mobility Group Box 1 Pseudogene 6) is a Pseudogene.

Additional gene information for HMGB1P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P6 Gene

Genomics for HMGB1P6 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P6 Gene

Promoters and enhancers for HMGB1P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I071165 Enhancer 0.5 dbSUPER 550.8 -1.4 -1424 3 ZBTB11 ZNF133 MAFK ZBTB40 HMGB1P6 THSD4-AS1 THSD4
GH15I070269 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.8 +894.6 894614 2.3 FEZF1 BRCA1 FOS DEK RXRA ZNF518A MAFF STAT3 HNF4A SP7 HMGB1P6 ENSG00000259744 MIR629 GC15P070262 GC15P070279
GH15I071745 Enhancer 1.2 Ensembl ENCODE 10.8 -581.9 -581904 3.5 PKNOX1 CLOCK FOXA2 MLX NEUROD1 SIN3A FEZF1 ZNF2 ZNF143 FOS ENSG00000261187 PARP6 BBS4 LRRC49 CELF6 NR2E3 TMEM202-AS1 ARIH1 ENSG00000260672 HMGB1P6
GH15I071042 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 10.9 +121.7 121721 3.4 PKNOX1 ZNF621 JUN ZNF10 FEZF1 ZNF501 ZNF555 JUND SCRT2 FOS HMGB1P6 ENSG00000259744 RPL5P3 THAP10 LRRC49
GH15I070534 Enhancer 1.1 FANTOM5 Ensembl ENCODE 10.8 +630.0 630009 2.2 USF1 ZNF521 ZNF114 ZNF621 ZSCAN4 MAX ZNF398 ZNF512B ZNF366 ZNF157 PIR45187 GC15P070537 HMGB1P6 ENSG00000259744 PIR55212 GC15M070491
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P6 Gene

Genomic Locations for HMGB1P6 Gene
chr15:71,163,472-71,165,512
(GRCh38/hg38)
Size:
2,041 bases
Orientation:
Minus strand
chr15:71,456,011-71,457,851
(GRCh37/hg19)

Genomic View for HMGB1P6 Gene

Genes around HMGB1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P6 Gene

Proteins for HMGB1P6 Gene

Post-translational modifications for HMGB1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P6 Gene

Domains & Families for HMGB1P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P6 Gene

Function for HMGB1P6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P6 Gene

Localization for HMGB1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P6 Gene

Pathways & Interactions for HMGB1P6 Gene

SuperPathways for HMGB1P6 Gene

No Data Available

Interacting Proteins for HMGB1P6 Gene

Gene Ontology (GO) - Biological Process for HMGB1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P6 Gene

Drugs & Compounds for HMGB1P6 Gene

No Compound Related Data Available

Transcripts for HMGB1P6 Gene

mRNA/cDNA for HMGB1P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P6 Gene

No ASD Table

Relevant External Links for HMGB1P6 Gene

GeneLoc Exon Structure for
HMGB1P6
ECgene alternative splicing isoforms for
HMGB1P6

Expression for HMGB1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P6 Gene:

HMGB1P6
genes like me logo Genes that share expression patterns with HMGB1P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P6 Gene

Orthologs for HMGB1P6 Gene

Evolution for HMGB1P6 Gene

ENSEMBL:
Gene Tree for HMGB1P6 (if available)
TreeFam:
Gene Tree for HMGB1P6 (if available)

No data available for Orthologs for HMGB1P6 Gene

Paralogs for HMGB1P6 Gene

No data available for Paralogs for HMGB1P6 Gene

Variants for HMGB1P6 Gene

Additional Variant Information for HMGB1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P6 Gene

Disorders for HMGB1P6 Gene

No disorders were found for HMGB1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P6 Gene

Publications for HMGB1P6 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58
  2. Mapping and molecular characterization of five HMG1-related DNA sequences. (PMID: 9925949) Rogalla P … Bullerdiek J (Cytogenetics and cell genetics 1998) 2 3 58

Products for HMGB1P6 Gene

Sources for HMGB1P6 Gene

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