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HMGB1P50 Gene(Pseudogene)

High Mobility Group Box 1 Pseudogene 50

GCID:
GC10P049552
GIFtS:
7
Genes Participants
UDN Logo

Aliases for HMGB1P50 Gene

Aliases for HMGB1P50 Gene

  • High Mobility Group Box 1 Pseudogene 50 2 3 5

External Ids for HMGB1P50 Gene

Previous GeneCards Identifiers for HMGB1P50 Gene

  • GC00U936666

Summaries for HMGB1P50 Gene

GeneCards Summary for HMGB1P50 Gene

HMGB1P50 (High Mobility Group Box 1 Pseudogene 50) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P50 Gene

Genomics for HMGB1P50 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGB1P50 Gene

Enhancers for HMGB1P50 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G049549 1 Ensembl ENCODE 0.7 +0.7 723 4.6 HDAC1 JUN DDX20 ZNF175 PYGO2 FOSL1 ZNF316 GATA3 GATA2 NFE2 ERCC6 PGBD3 ENSG00000235939 HMGB1P50 GC10P049595
GH10G049567 1.3 FANTOM5 Ensembl ENCODE 0.4 +17.6 17598 2.2 TBP MXI1 TAF1 JUN MAX CEBPG RELA RFX5 CBX5 NFYB ERCC6 SLC18A3 CHAT PGBD3 HMGB1P50 GC10P049595
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P50 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P50 Gene

Chromosome:
10
Start:
49,551,308 bp from pter
End:
49,552,652 bp from pter
Size:
1,345 bases
Orientation:
Plus strand

Genomic View for HMGB1P50 Gene

Genes around HMGB1P50 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P50 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P50 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for HMGB1P50 Gene

Proteins for HMGB1P50 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGB1P50 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P50 Gene

Domains & Families for HMGB1P50 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P50 Gene

Function for HMGB1P50 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P50 Gene

Localization for HMGB1P50 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P50 Gene

Pathways & Interactions for HMGB1P50 Gene

SuperPathways for HMGB1P50 Gene

PathCards logo More details on SuperPathways for HMGB1P50
No Data Available

Interacting Proteins for HMGB1P50 Gene

Gene Ontology (GO) - Biological Process for HMGB1P50 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P50 Gene

Drugs & Compounds for HMGB1P50 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGB1P50 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGB1P50 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P50 Gene

No ASD Table

Relevant External Links for HMGB1P50 Gene

GeneLoc Exon Structure for
HMGB1P50
ECgene alternative splicing isoforms for
HMGB1P50

Expression for HMGB1P50 Gene

Products:

  1. Primer

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P50 Gene:

HMGB1P50
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P50 Gene

Orthologs for HMGB1P50 Gene

Evolution for HMGB1P50 Gene

ENSEMBL:
Gene Tree for HMGB1P50 (if available)
TreeFam:
Gene Tree for HMGB1P50 (if available)

No data available for Orthologs for HMGB1P50 Gene

Paralogs for HMGB1P50 Gene

No data available for Paralogs for HMGB1P50 Gene

Variants for HMGB1P50 Gene

Relevant External Links for HMGB1P50 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P50 Gene

Disorders for HMGB1P50 Gene

No disorders were found for HMGB1P50 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P50 Gene

Publications for HMGB1P50 Gene

No publications were found for HMGB1P50 Gene.

Products for HMGB1P50 Gene

Sources for HMGB1P50 Gene

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