Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMGB1P49 Gene

Subcategory (RNA class) for HMGB1P49 Gene

lncRNA

Aliases for HMGB1P49 Gene

  • High Mobility Group Box 1 Pseudogene 49 2 3
  • High-Mobility Group Box 1 Pseudogene 49 2
  • RP11-1060J15.5 5

External Ids for HMGB1P49 Gene

ORGUL Members for HMGB1P49 Gene

Previous GeneCards Identifiers for HMGB1P49 Gene

  • GC12P027855

Summaries for HMGB1P49 Gene

GeneCards Summary for HMGB1P49 Gene

HMGB1P49 (High Mobility Group Box 1 Pseudogene 49) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P49 Gene

Genomics for HMGB1P49 Gene

Regulatory Elements for HMGB1P49 Gene

Enhancers for HMGB1P49 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HMGB1P49 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P49 Gene

Chromosome:
12
Start:
27,702,338 bp from pter
End:
27,702,906 bp from pter
Size:
569 bases
Orientation:
Plus strand

Genomic View for HMGB1P49 Gene

Genes around HMGB1P49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P49 Gene

Proteins for HMGB1P49 Gene

Post-translational modifications for HMGB1P49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P49 Gene

Domains & Families for HMGB1P49 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P49 Gene

Function for HMGB1P49 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P49 Gene

Localization for HMGB1P49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P49 Gene

Pathways & Interactions for HMGB1P49 Gene

SuperPathways for HMGB1P49 Gene

No Data Available

Interacting Proteins for HMGB1P49 Gene

Gene Ontology (GO) - Biological Process for HMGB1P49 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P49 Gene

Drugs & Compounds for HMGB1P49 Gene

No Compound Related Data Available

Transcripts for HMGB1P49 Gene

mRNA/cDNA for HMGB1P49 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P49 Gene

No ASD Table

Relevant External Links for HMGB1P49 Gene

GeneLoc Exon Structure for
HMGB1P49
ECgene alternative splicing isoforms for
HMGB1P49

Expression for HMGB1P49 Gene

mRNA expression in normal human tissues for HMGB1P49 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P49 Gene

This gene is overexpressed in Colon - Transverse (x20.1) and Small Intestine - Terminal Ileum (x4.8).
genes like me logo Genes that share expression patterns with HMGB1P49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HMGB1P49 Gene

Orthologs for HMGB1P49 Gene

Evolution for HMGB1P49 Gene

ENSEMBL:
Gene Tree for HMGB1P49 (if available)
TreeFam:
Gene Tree for HMGB1P49 (if available)

No data available for Orthologs for HMGB1P49 Gene

Paralogs for HMGB1P49 Gene

No data available for Paralogs for HMGB1P49 Gene

Variants for HMGB1P49 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for HMGB1P49 Gene

Disorders for HMGB1P49 Gene

No disorders were found for HMGB1P49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P49 Gene

Publications for HMGB1P49 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 67

Products for HMGB1P49 Gene

Sources for HMGB1P49 Gene

Content