Aliases for HMGB1P49 Gene
Subcategory (RNA class) for HMGB1P49 Gene
lncRNA
Aliases for HMGB1P49 Gene
External Ids for HMGB1P49 Gene
- HGNC: 39282
- Entrez Gene: 100420013
- Ensembl: ENSG00000230519
ORGUL Members for HMGB1P49 Gene
Previous GeneCards Identifiers for HMGB1P49 Gene
- GC12P027855
Summaries for HMGB1P49 Gene
GeneCards Summary for HMGB1P49 Gene
HMGB1P49 (High Mobility Group Box 1 Pseudogene 49) is a Pseudogene, and is affiliated with the lncRNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P49 Gene
Genomics for HMGB1P49 Gene
Regulatory Elements for HMGB1P49 Gene
Enhancers for HMGB1P49 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH12G027330 | 1.9 | FANTOM5 Ensembl ENCODE dbSUPER | 5.2 | -368.3 | -368253 | 7.4 | WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 ZNF48 GLIS2 ZNF416 | STK38L MANSC4 TM7SF3 MED21 HMGB1P49 FGFR1OP2 ARNTL2 ARNTL2-AS1 |
| GH12G027709 | 1.2 | ENCODE | 6.5 | +8.7 | 8702 | 3.0 | CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 | ENSG00000256377 MANSC4 KLHL42 HMGB1P49 MRPS35 ENSG00000252585 |
| GH12G027703 | 1 | ENCODE | 0.7 | +1.6 | 1585 | 0.3 | ZNF2 ZNF143 DEK REST ZNF518A KAT8 MIER3 ATF4 SMARCA4 STAT3 | PPFIBP1 MANSC4 ENSG00000256504 HMGB1P49 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGB1P49 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGB1P49 Gene
- Chromosome:
- 12
- Start:
- 27,702,338 bp from pter
- End:
- 27,702,906 bp from pter
- Size:
- 569 bases
- Orientation:
- Plus strand
Genomic View for HMGB1P49 Gene
Genes around HMGB1P49 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p11.22 by Ensembl
- 12p11.22 by Entrez Gene
- 12p11.22 by HGNC
HMGB1P49 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGB1P49 Gene
Proteins for HMGB1P49 Gene
Post-translational modifications for HMGB1P49 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGB1P49
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P49
- Origene Custom Protein Services for HMGB1P49
- Search GeneTex for Proteins for HMGB1P49
Assay Products
No data available for DME Specific Peptides for HMGB1P49 Gene
Domains & Families for HMGB1P49 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P49 Gene
Function for HMGB1P49 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGB1P49
CRISPR Products
- Browse CRISPR knockouts for HMGB1P49
miRNA Products
- Search ViGene Biosciences for HMGB1P49
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P49
Cell Line Products
- Search ViGene Biosciences for HMGB1P49
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P49 Gene
Localization for HMGB1P49 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P49 Gene
Transcripts for HMGB1P49 Gene
mRNA/cDNA for HMGB1P49 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGB1P49
miRNA Products
- Search ViGene Biosciences for HMGB1P49
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P49
Flow Cytometry Products
Expression for HMGB1P49 Gene
mRNA differential expression in normal tissues according to GTEx for HMGB1P49 Gene
This gene is overexpressed in Colon - Transverse (x20.1) and Small Intestine - Terminal Ileum (x4.8).
NURSA nuclear receptor signaling pathways regulating expression of HMGB1P49 Gene:
HMGB1P49
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P49 Gene
Orthologs for HMGB1P49 Gene
No data available for Orthologs for HMGB1P49 Gene
Paralogs for HMGB1P49 Gene
No data available for Paralogs for HMGB1P49 Gene
Variants for HMGB1P49 Gene
Relevant External Links for HMGB1P49 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGB1P49
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P49 Gene
Disorders for HMGB1P49 Gene
No disorders were found for HMGB1P49 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P49 Gene
Publications for HMGB1P49 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGB1P49 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P49
- Origene Custom Protein Services for HMGB1P49
- Browse OriGene Inhibitory RNA Products For HMGB1P49
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGB1P49
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGB1P49
- GenScript: Custom all cDNA clones Services for HMGB1P49
- GenScript Custom Purified and Recombinant Proteins Services for HMGB1P49
- GenScript Custom Assay Services for HMGB1P49
- GenScript Custom overexpressing Cell Line Services for HMGB1P49
- Browse GenScript CRISPR for HMGB1P49
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HMGB1P49
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGB1P49
- VectorBuilder custom plasmid, inducible vectors for HMGB1P49
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGB1P49
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGB1P49 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer