Aliases for HMGB1P46 Gene
Aliases for HMGB1P46 Gene
External Ids for HMGB1P46 Gene
- HGNC: 39279
- Entrez Gene: 100419978
- Ensembl: ENSG00000254146
Previous GeneCards Identifiers for HMGB1P46 Gene
- GC08M108185
Summaries for HMGB1P46 Gene
GeneCards Summary for HMGB1P46 Gene
HMGB1P46 (High Mobility Group Box 1 Pseudogene 46) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P46 Gene
Genomics for HMGB1P46 Gene
Regulatory Elements for HMGB1P46 Gene
Enhancers for HMGB1P46 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH08G107179 | 0.7 | dbSUPER | 0.4 | -7.6 | -7580 | 3.0 | SOX13 ZNF146 FOXA2 MAFG MNT ATF2 GATA3 ZNF316 HNF4A EMSY | HMGB1P46 GC08M107315 |
| GH08G107222 | 1.3 | FANTOM5 Ensembl ENCODE | 0.2 | -49.8 | -49753 | 1.4 | JUN CEBPG ZNF316 POLR2A FOS MAFK NFE2L2 BHLHE40 CEBPB EP300 | HMGB1P46 GC08M107315 |
| GH08G107185 | 0.6 | dbSUPER | 0.4 | -16.0 | -16024 | 8.8 | GATA3 ZNF146 SMARCA4 POLR2A SCRT2 NR3C1 PRDM4 ZNF18 | TAGLN2P1 HMGB1P46 GC08M107315 |
| GH08G107304 | 1.7 | FANTOM5 Ensembl ENCODE dbSUPER | 0.1 | -131.7 | -131749 | 1.6 | TBL1XR1 ARNT TCF12 ELK1 CREM NCOA1 ZNF592 MEF2D SMARCA4 PBX2 | GC08M107315 HMGB1P46 |
| GH08G107309 | 1.5 | FANTOM5 ENCODE dbSUPER | 0.1 | -136.6 | -136644 | 1.9 | HDGF PKNOX1 ATF1 ARNT YBX1 ZBTB7B TCF12 ZNF766 GATA2 FOS | ANGPT1 GC08M107315 HMGB1P46 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGB1P46 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGB1P46 Gene
- Chromosome:
- 8
- Start:
- 107,173,199 bp from pter
- End:
- 107,173,809 bp from pter
- Size:
- 611 bases
- Orientation:
- Minus strand
Genomic View for HMGB1P46 Gene
Genes around HMGB1P46 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8q23.1 by Ensembl
- 8q23.1 by Entrez Gene
- 8q23.1 by HGNC
HMGB1P46 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGB1P46 Gene
Proteins for HMGB1P46 Gene
Post-translational modifications for HMGB1P46 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGB1P46
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P46
- Origene Custom Protein Services for HMGB1P46
- Search GeneTex for Proteins for HMGB1P46
Assay Products
No data available for DME Specific Peptides for HMGB1P46 Gene
Domains & Families for HMGB1P46 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P46 Gene
Function for HMGB1P46 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGB1P46
CRISPR Products
- Browse CRISPR knockouts for HMGB1P46
miRNA Products
- Search ViGene Biosciences for HMGB1P46
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P46
Cell Line Products
- Search ViGene Biosciences for HMGB1P46
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P46 Gene
Localization for HMGB1P46 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P46 Gene
Transcripts for HMGB1P46 Gene
mRNA/cDNA for HMGB1P46 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGB1P46
miRNA Products
- Search ViGene Biosciences for HMGB1P46
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P46
Flow Cytometry Products
Expression for HMGB1P46 Gene
NURSA nuclear receptor signaling pathways regulating expression of HMGB1P46 Gene:
HMGB1P46
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P46 Gene
Orthologs for HMGB1P46 Gene
No data available for Orthologs for HMGB1P46 Gene
Paralogs for HMGB1P46 Gene
No data available for Paralogs for HMGB1P46 Gene
Variants for HMGB1P46 Gene
Relevant External Links for HMGB1P46 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGB1P46
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P46 Gene
Disorders for HMGB1P46 Gene
No disorders were found for HMGB1P46 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P46 Gene
Publications for HMGB1P46 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGB1P46 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
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- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P46
- Origene Custom Protein Services for HMGB1P46
- Browse OriGene Inhibitory RNA Products For HMGB1P46
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGB1P46
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGB1P46
- GenScript: Custom all cDNA clones Services for HMGB1P46
- GenScript Custom Purified and Recombinant Proteins Services for HMGB1P46
- GenScript Custom Assay Services for HMGB1P46
- GenScript Custom overexpressing Cell Line Services for HMGB1P46
- Browse GenScript CRISPR for HMGB1P46
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
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- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGB1P46
- VectorBuilder custom plasmid, inducible vectors for HMGB1P46
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGB1P46
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGB1P46 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer