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Aliases for HMGB1P43 Gene

Subcategory (RNA class) for HMGB1P43 Gene

antisense

Aliases for HMGB1P43 Gene

  • High Mobility Group Box 1 Pseudogene 43 2 3
  • High-Mobility Group Box 1 Pseudogene 43 2
  • AC087468.1 5

External Ids for HMGB1P43 Gene

ORGUL Members for HMGB1P43 Gene

Previous GeneCards Identifiers for HMGB1P43 Gene

  • GC15M085483

Summaries for HMGB1P43 Gene

GeneCards Summary for HMGB1P43 Gene

HMGB1P43 (High Mobility Group Box 1 Pseudogene 43) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for HMGB1P43 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P43 Gene

Genomics for HMGB1P43 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P43 Gene

Promoters and enhancers for HMGB1P43 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I084954 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -14.3 -14332 1.1 HDAC1 ELF3 ARID4B SIN3A ZNF2 RAD21 RFX5 ZNF766 GLIS2 ZNF143 PDE8A ENSG00000200991 NMB WDR73 ZNF592 GC15P084976 HMGB1P43 SLC28A1
GH15I084959 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -19.4 -19375 2.6 HDAC1 PKNOX1 ZBTB40 TCF12 ZNF766 GATA2 EGR1 FOS ATF7 SMARCA5 GC15P084976 WDR73 NMB ENSG00000200991 HMGB1P43 SLC28A1
GH15I084947 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -7.5 -7542 2.3 MEIS2 PKNOX1 JUN TAL1 FOSL1 POLR2A FOSL2 FOS ZNF600 NFE2 SEC11A HMGB1P43 GC15P084976 SLC28A1
GH15I084950 Enhancer 0.8 FANTOM5 0.4 -9.1 -9061 0.4 HDAC1 ATF1 TAL1 ZNF644 VEZF1 NFE2 ZNF639 GATAD2A PHF21A L3MBTL2 PDE8A SLC28A1 HMGB1P43 GC15P084976
GH15I084951 Enhancer 0.8 ENCODE 0.4 -9.9 -9912 0.2 ATF1 NFRKB TCF12 ZNF766 ATF7 ZBTB11 CEBPB NCOA1 ZNF592 MTA1 PDE8A ENSG00000200991 WDR73 NMB ZNF592 HMGB1P43 GC15P084976 SLC28A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P43 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P43 Gene

Genomic Locations for HMGB1P43 Gene
chr15:84,940,504-84,941,133
(GRCh38/hg38)
Size:
630 bases
Orientation:
Minus strand
chr15:85,483,735-85,484,364
(GRCh37/hg19)

Genomic View for HMGB1P43 Gene

Genes around HMGB1P43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P43 Gene

Proteins for HMGB1P43 Gene

Post-translational modifications for HMGB1P43 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P43 Gene

Domains & Families for HMGB1P43 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P43 Gene

Function for HMGB1P43 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P43 Gene

Localization for HMGB1P43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P43 Gene

Pathways & Interactions for HMGB1P43 Gene

SuperPathways for HMGB1P43 Gene

No Data Available

Interacting Proteins for HMGB1P43 Gene

Gene Ontology (GO) - Biological Process for HMGB1P43 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P43 Gene

Drugs & Compounds for HMGB1P43 Gene

No Compound Related Data Available

Transcripts for HMGB1P43 Gene

mRNA/cDNA for HMGB1P43 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P43 Gene

No ASD Table

Relevant External Links for HMGB1P43 Gene

GeneLoc Exon Structure for
HMGB1P43
ECgene alternative splicing isoforms for
HMGB1P43

Expression for HMGB1P43 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P43 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P43 Gene

This gene is overexpressed in Liver (x36.8), Kidney - Cortex (x6.6), and Small Intestine - Terminal Ileum (x6.0).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P43 Gene:

HMGB1P43
genes like me logo Genes that share expression patterns with HMGB1P43: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P43 Gene

Orthologs for HMGB1P43 Gene

Evolution for HMGB1P43 Gene

ENSEMBL:
Gene Tree for HMGB1P43 (if available)
TreeFam:
Gene Tree for HMGB1P43 (if available)

No data available for Orthologs for HMGB1P43 Gene

Paralogs for HMGB1P43 Gene

No data available for Paralogs for HMGB1P43 Gene

Variants for HMGB1P43 Gene

Additional Variant Information for HMGB1P43 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P43 Gene

Disorders for HMGB1P43 Gene

No disorders were found for HMGB1P43 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P43 Gene

Publications for HMGB1P43 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P43 Gene

Sources for HMGB1P43 Gene

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