Aliases for HMGB1P42 Gene
Subcategory (RNA class) for HMGB1P42 Gene
antisense
Aliases for HMGB1P42 Gene
External Ids for HMGB1P42 Gene
- HGNC: 39189
- Entrez Gene: 100873906
- Ensembl: ENSG00000254735
ORGUL Members for HMGB1P42 Gene
Previous GeneCards Identifiers for HMGB1P42 Gene
- GC00U931477
- GC11M120806
Summaries for HMGB1P42 Gene
GeneCards Summary for HMGB1P42 Gene
HMGB1P42 (High Mobility Group Box 1 Pseudogene 42) is a Pseudogene, and is affiliated with the antisense RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P42 Gene
Genomics for HMGB1P42 Gene
Regulatory Elements for HMGB1P42 Gene
Enhancers for HMGB1P42 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH11G120952 | 1 | Ensembl ENCODE | 0.4 | -16.6 | -16563 | 1.5 | ELF3 CTCF TFAP4 MXI1 KLF1 NFXL1 RAD21 SCRT2 ZNF143 SMC3 | LOC101929208 HMGB1P42 |
| GH11G120934 | 0.5 | ENCODE | 0.7 | +2.3 | 2338 | 0.1 | CTCF GLIS1 ZNF384 MAFK RAD21 | TECTA HMGB1P42 GC11P120895 |
| GH11G120926 | 0.8 | ENCODE | 0.4 | +10.5 | 10508 | 0.2 | MXI1 TBL1XR1 BACH1 BMI1 EBF1 RELA ARID3A EED RELB ETV6 | LOC101929227 TECTA HMGB1P42 GC11P120895 |
| GH11G120929 | 0.7 | ENCODE | 0.4 | +6.9 | 6888 | 0.2 | CTCF ZNF654 MAX TRIM22 RAD21 ZFP69B ZNF692 SMC3 ZNF143 PRDM10 | LOC101929227 GRIK4 TECTA HMGB1P42 GC11P120895 |
| GH11G120956 | 0.8 | Ensembl ENCODE | 0.3 | -20.8 | -20766 | 1.5 | RFX1 POU5F1 CEBPB ETS1 | TECTA LOC101929208 HMGB1P42 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGB1P42 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGB1P42 Gene
- Chromosome:
- 11
- Start:
- 120,936,028 bp from pter
- End:
- 120,936,654 bp from pter
- Size:
- 627 bases
- Orientation:
- Minus strand
Genomic View for HMGB1P42 Gene
Genes around HMGB1P42 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q23.3 by Ensembl
- 11q23.3 by Entrez Gene
- 11q23.3 by HGNC
HMGB1P42 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGB1P42 Gene
Proteins for HMGB1P42 Gene
Post-translational modifications for HMGB1P42 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGB1P42
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P42
- Origene Custom Protein Services for HMGB1P42
- Search GeneTex for Proteins for HMGB1P42
Assay Products
No data available for DME Specific Peptides for HMGB1P42 Gene
Domains & Families for HMGB1P42 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P42 Gene
Function for HMGB1P42 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGB1P42
CRISPR Products
- Browse CRISPR knockouts for HMGB1P42
miRNA Products
- Search ViGene Biosciences for HMGB1P42
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P42
Cell Line Products
- Search ViGene Biosciences for HMGB1P42
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P42 Gene
Localization for HMGB1P42 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P42 Gene
Transcripts for HMGB1P42 Gene
mRNA/cDNA for HMGB1P42 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGB1P42
miRNA Products
- Search ViGene Biosciences for HMGB1P42
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P42
Flow Cytometry Products
Expression for HMGB1P42 Gene
NURSA nuclear receptor signaling pathways regulating expression of HMGB1P42 Gene:
HMGB1P42
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P42 Gene
Orthologs for HMGB1P42 Gene
No data available for Orthologs for HMGB1P42 Gene
Paralogs for HMGB1P42 Gene
No data available for Paralogs for HMGB1P42 Gene
Variants for HMGB1P42 Gene
Relevant External Links for HMGB1P42 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGB1P42
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P42 Gene
Disorders for HMGB1P42 Gene
No disorders were found for HMGB1P42 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P42 Gene
Publications for HMGB1P42 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGB1P42 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
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- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
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- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P42
- Origene Custom Protein Services for HMGB1P42
- Browse OriGene Inhibitory RNA Products For HMGB1P42
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGB1P42
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGB1P42
- GenScript: Custom all cDNA clones Services for HMGB1P42
- GenScript Custom Purified and Recombinant Proteins Services for HMGB1P42
- GenScript Custom Assay Services for HMGB1P42
- GenScript Custom overexpressing Cell Line Services for HMGB1P42
- Browse GenScript CRISPR for HMGB1P42
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
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- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
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- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGB1P42
- VectorBuilder custom plasmid, inducible vectors for HMGB1P42
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGB1P42
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGB1P42 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer