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Aliases for HMGB1P41 Gene

Subcategory (RNA class) for HMGB1P41 Gene


Aliases for HMGB1P41 Gene

  • High Mobility Group Box 1 Pseudogene 41 2 3 5
  • High-Mobility Group Box 1 Pseudogene 41 2

External Ids for HMGB1P41 Gene

ORGUL Members for HMGB1P41 Gene

Previous GeneCards Identifiers for HMGB1P41 Gene

  • GC00U931469
  • GC08M081725

Summaries for HMGB1P41 Gene

GeneCards Summary for HMGB1P41 Gene

HMGB1P41 (High Mobility Group Box 1 Pseudogene 41) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P41 Gene

Genomics for HMGB1P41 Gene

Regulatory Elements for HMGB1P41 Gene

Enhancers for HMGB1P41 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G080807 1 Ensembl ENCODE 0.7 +4.5 4518 0.3 HDAC1 PKNOX1 MLX ETV1 SAP30 BACH1 SIN3A RAD21 CTBP1 GATA3 RNU11-6P ZNF704 HMGB1P41 GC08M080788
GH08G080809 1 Ensembl ENCODE 0.7 +2.1 2137 1.1 PKNOX1 NFIB CEBPG DPF2 FOXA1 CTBP1 RAD51 GATA3 ADNP TARDBP RNU11-6P HMGB1P41 GC08M080788
GH08G080820 1.1 ENCODE 0.4 -8.2 -8206 2.1 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF143 HNRNPA1P36 ZNF704 HMGB1P41
GH08G080819 0.8 ENCODE 0.4 -7.0 -7020 0.2 BRD4 LEF1 NFRKB GTF2E2 ZNF175 DMAP1 CEBPG ZNF644 ZNF335 GATA3 HMGB1P41 ZNF704
GH08G080864 1.5 FANTOM5 Ensembl ENCODE 0.2 -52.4 -52353 0.9 HDAC1 ELF3 PKNOX1 FOXA2 ATF1 NFIB ARID4B ZNF48 ZNF766 GATA2 RNU11-6P PAG1 ZNF704 ZBTB10 HMGB1P41
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P41 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P41 Gene

80,812,142 bp from pter
80,812,581 bp from pter
440 bases
Minus strand

Genomic View for HMGB1P41 Gene

Genes around HMGB1P41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P41 Gene

Proteins for HMGB1P41 Gene

Post-translational modifications for HMGB1P41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P41 Gene

Domains & Families for HMGB1P41 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P41 Gene

Function for HMGB1P41 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P41 Gene

Localization for HMGB1P41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P41 Gene

Pathways & Interactions for HMGB1P41 Gene

SuperPathways for HMGB1P41 Gene

No Data Available

Interacting Proteins for HMGB1P41 Gene

Gene Ontology (GO) - Biological Process for HMGB1P41 Gene


No data available for Pathways by source and SIGNOR curated interactions for HMGB1P41 Gene

Drugs & Compounds for HMGB1P41 Gene

No Compound Related Data Available

Transcripts for HMGB1P41 Gene

mRNA/cDNA for HMGB1P41 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P41 Gene

No ASD Table

Relevant External Links for HMGB1P41 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HMGB1P41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P41 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P41 Gene:

genes like me logo Genes that share expression patterns with HMGB1P41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P41 Gene

Orthologs for HMGB1P41 Gene

Evolution for HMGB1P41 Gene

Gene Tree for HMGB1P41 (if available)
Gene Tree for HMGB1P41 (if available)

No data available for Orthologs for HMGB1P41 Gene

Paralogs for HMGB1P41 Gene

No data available for Paralogs for HMGB1P41 Gene

Variants for HMGB1P41 Gene

Relevant External Links for HMGB1P41 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P41 Gene

Disorders for HMGB1P41 Gene

No disorders were found for HMGB1P41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P41 Gene

Publications for HMGB1P41 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB1P41 Gene

Sources for HMGB1P41 Gene

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