Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMGB1P4 Gene

Aliases for HMGB1P4 Gene

  • High Mobility Group Box 1 Pseudogene 4 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 4 Pseudogene 2 3
  • High-Mobility Group Box 1-Like 4 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 4 2
  • High-Mobility Group Box 1 Pseudogene 4 2
  • HMG1L4P 3
  • HMGB1L4 3
  • HMG1L4 3

External Ids for HMGB1P4 Gene

Previous HGNC Symbols for HMGB1P4 Gene

  • HMG1L4
  • HMG1L4P
  • HMGB1L4

Previous GeneCards Identifiers for HMGB1P4 Gene

  • GC02M171460

Summaries for HMGB1P4 Gene

GeneCards Summary for HMGB1P4 Gene

HMGB1P4 (High Mobility Group Box 1 Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P4 Gene

Genomics for HMGB1P4 Gene

Regulatory Elements for HMGB1P4 Gene

Enhancers for HMGB1P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F170567 0.2 ENCODE 0.3 +34.4 34446 1.3 ZNF280D RAD21 CBX1 ZNF316 CBX5 ZNF585B ZNF26 ZNF143 TRIM24 MAFK DCAF17 DAP3P2 PHOSPHO2 UBR3 ENSG00000239467 HMGB1P4 GC02P170510
GH02F170554 0.6 ENCODE 0.2 +47.6 47600 1.1 JUND JUNB NBN CREM RAD21 MAFK GABPA GC02P170510 HMGB1P4
GH02F170529 1.1 Ensembl ENCODE 0.2 +71.8 71797 1.2 MLX ARID4B FEZF1 DMAP1 ZNF48 YY1 SLC30A9 ZNF263 SP5 MXD4 GC02P170510 HMGB1P4
GH02F170525 0.7 Ensembl ENCODE 0.2 +76.7 76707 1.4 BCOR PKNOX1 ZNF146 ESRRA JUN EBF1 HIC1 ZNF366 SCRT2 FOS GC02P170510 HMGB1P4
GH02F170509 0.5 ENCODE 0.1 +92.4 92399 0.2 PKNOX1 MTA2 JUNB TBX21 ZBTB40 EP300 RELA SMARCA4 CBX5 IKZF1 GC02P170510 HMGB1P4
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HMGB1P4 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P4 Gene

Chromosome:
2
Start:
170,600,138 bp from pter
End:
170,602,384 bp from pter
Size:
2,247 bases
Orientation:
Minus strand

Genomic View for HMGB1P4 Gene

Genes around HMGB1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P4 Gene

Proteins for HMGB1P4 Gene

Post-translational modifications for HMGB1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P4 Gene

Domains & Families for HMGB1P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P4 Gene

Function for HMGB1P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P4 Gene

Localization for HMGB1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P4 Gene

Pathways & Interactions for HMGB1P4 Gene

SuperPathways for HMGB1P4 Gene

No Data Available

Interacting Proteins for HMGB1P4 Gene

Gene Ontology (GO) - Biological Process for HMGB1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P4 Gene

Transcripts for HMGB1P4 Gene

mRNA/cDNA for HMGB1P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P4 Gene

No ASD Table

Relevant External Links for HMGB1P4 Gene

GeneLoc Exon Structure for
HMGB1P4
ECgene alternative splicing isoforms for
HMGB1P4

Expression for HMGB1P4 Gene

mRNA expression in normal human tissues for HMGB1P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P4 Gene:

HMGB1P4
genes like me logo Genes that share expression patterns with HMGB1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGB1P4 Gene

Orthologs for HMGB1P4 Gene

Evolution for HMGB1P4 Gene

ENSEMBL:
Gene Tree for HMGB1P4 (if available)
TreeFam:
Gene Tree for HMGB1P4 (if available)

No data available for Orthologs for HMGB1P4 Gene

Paralogs for HMGB1P4 Gene

No data available for Paralogs for HMGB1P4 Gene

Variants for HMGB1P4 Gene

Relevant External Links for HMGB1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P4 Gene

Disorders for HMGB1P4 Gene

No disorders were found for HMGB1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P4 Gene

Publications for HMGB1P4 Gene

  1. Mapping and molecular characterization of five HMG1-related DNA sequences. (PMID: 9925949) Rogalla P. … Bullerdiek J. (Cytogenet. Cell Genet. 1998) 2 3 64
  2. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for HMGB1P4 Gene

Sources for HMGB1P4 Gene

Content
Loading form....