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Aliases for HMGB1P39 Gene

Subcategory (RNA class) for HMGB1P39 Gene

lncRNA

Aliases for HMGB1P39 Gene

  • High Mobility Group Box 1 Pseudogene 39 2 3 5
  • High-Mobility Group Box 1 Pseudogene 39 2

External Ids for HMGB1P39 Gene

ORGUL Members for HMGB1P39 Gene

Previous GeneCards Identifiers for HMGB1P39 Gene

  • GC06M076028

Summaries for HMGB1P39 Gene

GeneCards Summary for HMGB1P39 Gene

HMGB1P39 (High Mobility Group Box 1 Pseudogene 39) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P39 Gene

Genomics for HMGB1P39 Gene

Regulatory Elements for HMGB1P39 Gene

Enhancers for HMGB1P39 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F075317 0.8 Ensembl ENCODE 0.8 +2.3 2348 1.1 STAT1 TEAD4 PRDM10 NR2F2 FILIP1 ENSG00000237174 RPL26P20 HMGB1P39 GC06M075292
GH06F075333 1.1 Ensembl ENCODE 0.4 -14.6 -14563 2.1 INSM2 ZNF76 KLF17 FEZF1 ZNF2 ZNF366 SCRT2 ZNF362 YY2 CEBPB FILIP1 ENSG00000237174 LOC100506804 TMEM30A GC06P075349 HMGB1P39
GH06F075347 1.1 Ensembl ENCODE 0.3 -28.8 -28784 3.0 SIN3A RAD21 ZBTB40 GLIS2 ZNF366 SCRT2 ZNF362 REST ZEB2 ZNF843 FILIP1 RPL26P20 RNU1-34P MYO6 GC06P075349 HMGB1P39
GH06F075326 0.7 Ensembl ENCODE 0.4 -7.1 -7139 0.8 BCL11A CEBPB FILIP1 HMGB1P39 GC06P075349
GH06F075299 0.7 Ensembl ENCODE 0.3 +19.9 19886 1.5 NR3C1 WT1 FILIP1 GC06M075292 HMGB1P39
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P39 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P39 Gene

Chromosome:
6
Start:
75,319,032 bp from pter
End:
75,319,980 bp from pter
Size:
949 bases
Orientation:
Minus strand

Genomic View for HMGB1P39 Gene

Genes around HMGB1P39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P39 Gene

Proteins for HMGB1P39 Gene

Post-translational modifications for HMGB1P39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P39 Gene

Domains & Families for HMGB1P39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P39 Gene

Function for HMGB1P39 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P39 Gene

Localization for HMGB1P39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P39 Gene

Pathways & Interactions for HMGB1P39 Gene

SuperPathways for HMGB1P39 Gene

No Data Available

Interacting Proteins for HMGB1P39 Gene

Gene Ontology (GO) - Biological Process for HMGB1P39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P39 Gene

Transcripts for HMGB1P39 Gene

mRNA/cDNA for HMGB1P39 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P39 Gene

No ASD Table

Relevant External Links for HMGB1P39 Gene

GeneLoc Exon Structure for
HMGB1P39
ECgene alternative splicing isoforms for
HMGB1P39

Expression for HMGB1P39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB1P39 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P39 Gene

This gene is overexpressed in Heart - Atrial Appendage (x8.1).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P39 Gene:

HMGB1P39
genes like me logo Genes that share expression patterns with HMGB1P39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGB1P39 Gene

Orthologs for HMGB1P39 Gene

Evolution for HMGB1P39 Gene

ENSEMBL:
Gene Tree for HMGB1P39 (if available)
TreeFam:
Gene Tree for HMGB1P39 (if available)

No data available for Orthologs for HMGB1P39 Gene

Paralogs for HMGB1P39 Gene

No data available for Paralogs for HMGB1P39 Gene

Variants for HMGB1P39 Gene

Relevant External Links for HMGB1P39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P39 Gene

Disorders for HMGB1P39 Gene

No disorders were found for HMGB1P39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P39 Gene

Publications for HMGB1P39 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB1P39 Gene

Sources for HMGB1P39 Gene

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