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Aliases for HMGB1P39 Gene

Subcategory (RNA class) for HMGB1P39 Gene

lncRNA

Aliases for HMGB1P39 Gene

  • High Mobility Group Box 1 Pseudogene 39 2 3 5
  • High-Mobility Group Box 1 Pseudogene 39 2

External Ids for HMGB1P39 Gene

ORGUL Members for HMGB1P39 Gene

Previous GeneCards Identifiers for HMGB1P39 Gene

  • GC06M076028

Summaries for HMGB1P39 Gene

GeneCards Summary for HMGB1P39 Gene

HMGB1P39 (High Mobility Group Box 1 Pseudogene 39) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HMGB1P39 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P39 Gene

Genomics for HMGB1P39 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P39 Gene

Promoters and enhancers for HMGB1P39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I075333 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -14.6 -14562 2.1 ZSCAN4 INSM2 KLF17 ZNF76 SIN3A FEZF1 ZNF2 ZNF335 ZNF366 SCRT2 FILIP1 SENP6 ENSG00000237174 TMEM30A LOC100506804 HMGB1P39 GC06P075349
GH06I075317 Enhancer 0.5 ENCODE 0.8 +2.4 2377 1.1 SP1 STAT1 RXRA PRDM10 NR2F2 ENSG00000237174 FILIP1 RPL26P20 HMGB1P39 GC06M075292
GH06I075347 Enhancer 1 Ensembl ENCODE 0.3 -28.8 -28783 3 MZF1 SIN3A ZBTB40 ZNF335 GLIS2 ZNF366 SCRT2 ZNF362 REST ZEB2 GC06P075349 FILIP1 RPL26P20 RNU1-34P MYO6 HMGB1P39
GH06I075326 Enhancer 0.6 ENCODE dbSUPER 0.4 -7.1 -7138 0.8 CEBPB FOSL2 FOS FILIP1 HMGB1P39 GC06P075349
GH06I075332 Enhancer 0.5 Ensembl dbSUPER 0.4 -12.7 -12721 0.2 POLR2A FILIP1 ENSG00000237174 RNU1-34P RPL26P20 HMGB1P39 GC06P075349
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P39 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P39 Gene

Genomic Locations for HMGB1P39 Gene
chr6:75,319,032-75,319,980
(GRCh38/hg38)
Size:
949 bases
Orientation:
Minus strand
chr6:76,028,748-76,029,696
(GRCh37/hg19)

Genomic View for HMGB1P39 Gene

Genes around HMGB1P39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P39 Gene

Proteins for HMGB1P39 Gene

Post-translational modifications for HMGB1P39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P39 Gene

Domains & Families for HMGB1P39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P39 Gene

Function for HMGB1P39 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P39 Gene

Localization for HMGB1P39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P39 Gene

Pathways & Interactions for HMGB1P39 Gene

SuperPathways for HMGB1P39 Gene

No Data Available

Interacting Proteins for HMGB1P39 Gene

Gene Ontology (GO) - Biological Process for HMGB1P39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P39 Gene

Drugs & Compounds for HMGB1P39 Gene

No Compound Related Data Available

Transcripts for HMGB1P39 Gene

mRNA/cDNA for HMGB1P39 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P39 Gene

No ASD Table

Relevant External Links for HMGB1P39 Gene

GeneLoc Exon Structure for
HMGB1P39
ECgene alternative splicing isoforms for
HMGB1P39

Expression for HMGB1P39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P39 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P39 Gene

This gene is overexpressed in Heart - Atrial Appendage (x8.1).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P39 Gene:

HMGB1P39
genes like me logo Genes that share expression patterns with HMGB1P39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P39 Gene

Orthologs for HMGB1P39 Gene

Evolution for HMGB1P39 Gene

ENSEMBL:
Gene Tree for HMGB1P39 (if available)
TreeFam:
Gene Tree for HMGB1P39 (if available)

No data available for Orthologs for HMGB1P39 Gene

Paralogs for HMGB1P39 Gene

No data available for Paralogs for HMGB1P39 Gene

Variants for HMGB1P39 Gene

Additional Variant Information for HMGB1P39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P39 Gene

Disorders for HMGB1P39 Gene

No disorders were found for HMGB1P39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P39 Gene

Publications for HMGB1P39 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P39 Gene

Sources for HMGB1P39 Gene

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