Aliases for HMGB1P35 Gene
Aliases for HMGB1P35 Gene
External Ids for HMGB1P35 Gene
- HGNC: 39175
- Entrez Gene: 100419950
- Ensembl: ENSG00000251566
Previous GeneCards Identifiers for HMGB1P35 Gene
- GC00U931558
- GC05P076444
Summaries for HMGB1P35 Gene
GeneCards Summary for HMGB1P35 Gene
HMGB1P35 (High Mobility Group Box 1 Pseudogene 35) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P35 Gene
Genomics for HMGB1P35 Gene
Regulatory Elements for HMGB1P35 Gene
Enhancers for HMGB1P35 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH05G077144 | 0.7 | ENCODE | 0.7 | -1.9 | -1858 | 0.2 | CTCF ZNF654 ZNF10 TRIM22 REST ZNF2 RAD21 YY1 SMC3 ZNF143 | PDE8B ZBED3-AS1 LOC100422441 HMGB1P35 ZBED3 |
| GH05G077166 | 1.2 | Ensembl ENCODE | 0.3 | +21.6 | 21612 | 3.3 | PKNOX1 SIN3A BRCA1 KLF7 FOS ZNF263 YY2 ZHX2 ZNF662 ZNF491 | AGGF1 PDE8B HMGB1P35 |
| GH05G077133 | 0.8 | ENCODE | 0.4 | -13.3 | -13298 | 0.2 | FOXA2 ZBTB21 JUN INSM2 SIN3A ZNF366 SCRT2 ZNF600 FOS MAFK | HMGB1P35 ZBED3 |
| GH05G077155 | 0.5 | FANTOM5 | 0.4 | +9.0 | 9040 | 0.3 | TCF7 JUNB | HMGB1P35 PDE8B |
| GH05G077126 | 0.6 | FANTOM5 | 0.3 | -20.1 | -20055 | 0.4 | JUND NFIA ATF3 MAX HNF4G ZBTB33 HNF4A RAD21 | HMGB1P35 ZBED3 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGB1P35 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGB1P35 Gene
- Chromosome:
- 5
- Start:
- 77,146,568 bp from pter
- End:
- 77,147,165 bp from pter
- Size:
- 598 bases
- Orientation:
- Plus strand
Genomic View for HMGB1P35 Gene
Genes around HMGB1P35 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q13.3 by Ensembl
- 5q13.3 by Entrez Gene
- 5q13.3 by HGNC
HMGB1P35 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGB1P35 Gene
Proteins for HMGB1P35 Gene
Post-translational modifications for HMGB1P35 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGB1P35
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P35
- Origene Custom Protein Services for HMGB1P35
- Search GeneTex for Proteins for HMGB1P35
Assay Products
No data available for DME Specific Peptides for HMGB1P35 Gene
Domains & Families for HMGB1P35 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P35 Gene
Function for HMGB1P35 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGB1P35
CRISPR Products
- Browse CRISPR knockouts for HMGB1P35
miRNA Products
- Search ViGene Biosciences for HMGB1P35
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P35
Cell Line Products
- Search ViGene Biosciences for HMGB1P35
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P35 Gene
Localization for HMGB1P35 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P35 Gene
Transcripts for HMGB1P35 Gene
mRNA/cDNA for HMGB1P35 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGB1P35
miRNA Products
- Search ViGene Biosciences for HMGB1P35
Inhibitory RNA Products
- Search ViGene Biosciences for HMGB1P35
Flow Cytometry Products
Expression for HMGB1P35 Gene
mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P35 Gene
NURSA nuclear receptor signaling pathways regulating expression of HMGB1P35 Gene:
HMGB1P35
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P35 Gene
Orthologs for HMGB1P35 Gene
No data available for Orthologs for HMGB1P35 Gene
Paralogs for HMGB1P35 Gene
No data available for Paralogs for HMGB1P35 Gene
Variants for HMGB1P35 Gene
Relevant External Links for HMGB1P35 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGB1P35
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P35 Gene
Disorders for HMGB1P35 Gene
No disorders were found for HMGB1P35 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P35 Gene
Publications for HMGB1P35 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGB1P35 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P35
- Origene Custom Protein Services for HMGB1P35
- Browse OriGene Inhibitory RNA Products For HMGB1P35
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGB1P35
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGB1P35
- GenScript: Custom all cDNA clones Services for HMGB1P35
- GenScript Custom Purified and Recombinant Proteins Services for HMGB1P35
- GenScript Custom Assay Services for HMGB1P35
- GenScript Custom overexpressing Cell Line Services for HMGB1P35
- Browse GenScript CRISPR for HMGB1P35
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HMGB1P35
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGB1P35
- VectorBuilder custom plasmid, inducible vectors for HMGB1P35
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGB1P35
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGB1P35 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer