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Aliases for HMGB1P31 Gene

Subcategory (RNA class) for HMGB1P31 Gene

lncRNA

Aliases for HMGB1P31 Gene

  • High Mobility Group Box 1 Pseudogene 31 2 3 5
  • High-Mobility Group Box 1 Pseudogene 31 2

External Ids for HMGB1P31 Gene

ORGUL Members for HMGB1P31 Gene

Previous GeneCards Identifiers for HMGB1P31 Gene

  • GC00U931273
  • GC02P054279

Summaries for HMGB1P31 Gene

GeneCards Summary for HMGB1P31 Gene

HMGB1P31 (High Mobility Group Box 1 Pseudogene 31) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P31 Gene

Genomics for HMGB1P31 Gene

Regulatory Elements for HMGB1P31 Gene

Enhancers for HMGB1P31 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G054081 1.2 ENCODE dbSUPER 11.8 +30.6 30562 1.4 PKNOX1 ATF1 SIN3A TCF12 GATA2 FOS SP5 JUNB TBX21 ZNF592 ACYP2 HMGB1P31 RNU7-172P LOC105374667 ENSG00000272156 ENSG00000241114
GH02G053967 1.7 FANTOM5 ENCODE dbSUPER 7.7 -81.3 -81304 4.7 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 ACYP2 HMGB1P31 PSME4 ASB3 GPR75-ASB3
GH02G054041 1.8 FANTOM5 Ensembl ENCODE dbSUPER 7.1 -7.7 -7691 3.6 PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 SLC30A9 CBX5 FOS ACYP2 RNU7-172P EML6 TSPYL6 HMGB1P31 GPR75 RPL21P30
GH02G054121 1.1 Ensembl ENCODE 6.1 +71.3 71266 3.0 ELF3 TBP FOXA2 DNMT3B ZSCAN9 EGR1 FOS CREM MIXL1 ZNF680 RNU7-172P TSPYL6 ENSG00000272156 HMGB1P31 ACYP2 LOC105374615
GH02G053993 1.2 FANTOM5 Ensembl ENCODE 5.4 -56.7 -56724 2.8 ZNF362 JUNB ZNF426 ZNF394 ZNF781 ZNF518A ZNF697 ZNF555 ZNF34 ZBTB33 ACYP2 HMGB1P31 ASB3 PSME4 GC02P053991 GC02P054007
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P31 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P31 Gene

Chromosome:
2
Start:
54,051,334 bp from pter
End:
54,051,760 bp from pter
Size:
427 bases
Orientation:
Plus strand

Genomic View for HMGB1P31 Gene

Genes around HMGB1P31 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P31 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P31 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P31 Gene

Proteins for HMGB1P31 Gene

Post-translational modifications for HMGB1P31 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P31 Gene

Domains & Families for HMGB1P31 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P31 Gene

Function for HMGB1P31 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P31 Gene

Localization for HMGB1P31 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P31 Gene

Pathways & Interactions for HMGB1P31 Gene

SuperPathways for HMGB1P31 Gene

No Data Available

Interacting Proteins for HMGB1P31 Gene

Gene Ontology (GO) - Biological Process for HMGB1P31 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P31 Gene

Drugs & Compounds for HMGB1P31 Gene

No Compound Related Data Available

Transcripts for HMGB1P31 Gene

mRNA/cDNA for HMGB1P31 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P31 Gene

No ASD Table

Relevant External Links for HMGB1P31 Gene

GeneLoc Exon Structure for
HMGB1P31
ECgene alternative splicing isoforms for
HMGB1P31

Expression for HMGB1P31 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P31 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P31 Gene:

HMGB1P31
genes like me logo Genes that share expression patterns with HMGB1P31: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P31 Gene

Orthologs for HMGB1P31 Gene

Evolution for HMGB1P31 Gene

ENSEMBL:
Gene Tree for HMGB1P31 (if available)
TreeFam:
Gene Tree for HMGB1P31 (if available)

No data available for Orthologs for HMGB1P31 Gene

Paralogs for HMGB1P31 Gene

No data available for Paralogs for HMGB1P31 Gene

Variants for HMGB1P31 Gene

Relevant External Links for HMGB1P31 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P31

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P31 Gene

Disorders for HMGB1P31 Gene

No disorders were found for HMGB1P31 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P31 Gene

Publications for HMGB1P31 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB1P31 Gene

Sources for HMGB1P31 Gene

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