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Aliases for HMGB1P25 Gene

Subcategory (RNA class) for HMGB1P25 Gene

lncRNA

Aliases for HMGB1P25 Gene

  • High Mobility Group Box 1 Pseudogene 25 2 3 5
  • High-Mobility Group Box 1 Pseudogene 25 2

External Ids for HMGB1P25 Gene

ORGUL Members for HMGB1P25 Gene

Previous GeneCards Identifiers for HMGB1P25 Gene

  • GC02M009159

Summaries for HMGB1P25 Gene

GeneCards Summary for HMGB1P25 Gene

HMGB1P25 (High Mobility Group Box 1 Pseudogene 25) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P25 Gene

Genomics for HMGB1P25 Gene

Regulatory Elements for HMGB1P25 Gene

Enhancers for HMGB1P25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F009002 1.1 ENCODE 0.4 +15.0 14968 2.9 PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 ZNF2 ZNF143 ZNF207 FOS MBOAT2 HMGB1P25
GH02F009018 0.4 Ensembl 0.8 +0.5 499 0.4 IRF1 HMGB1P25 MBOAT2
GH02F009033 0.6 Ensembl 0.4 -14.7 -14702 0.4 ARID1B JUND SMARCA4 IKZF1 MGA MBOAT2 HMGB1P25 RPL30P3
GH02F009058 0.8 ENCODE 0.3 -39.3 -39278 0.2 KLF1 JUN KLF17 CHAMP1 HIC1 ZFHX2 ZNF316 CTBP1 ZNF366 TRIM24 MBOAT2 RPL30P3 HMGB1P25
GH02F009070 1.1 Ensembl ENCODE 0.2 -52.7 -52685 2.4 TBP ZFP64 SIN3A RAD21 FOS ZNF263 NFYA USF2 ZHX2 CEBPB MBOAT2 ENSG00000261104 RPL30P3 HMGB1P25
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P25 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P25 Gene

Chromosome:
2
Start:
9,018,263 bp from pter
End:
9,018,899 bp from pter
Size:
637 bases
Orientation:
Minus strand

Genomic View for HMGB1P25 Gene

Genes around HMGB1P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P25 Gene

Proteins for HMGB1P25 Gene

Post-translational modifications for HMGB1P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P25 Gene

Domains & Families for HMGB1P25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P25 Gene

Function for HMGB1P25 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P25 Gene

Localization for HMGB1P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P25 Gene

Pathways & Interactions for HMGB1P25 Gene

SuperPathways for HMGB1P25 Gene

No Data Available

Interacting Proteins for HMGB1P25 Gene

Gene Ontology (GO) - Biological Process for HMGB1P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P25 Gene

Transcripts for HMGB1P25 Gene

mRNA/cDNA for HMGB1P25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P25 Gene

No ASD Table

Relevant External Links for HMGB1P25 Gene

GeneLoc Exon Structure for
HMGB1P25
ECgene alternative splicing isoforms for
HMGB1P25

Expression for HMGB1P25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB1P25 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P25 Gene:

HMGB1P25
genes like me logo Genes that share expression patterns with HMGB1P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGB1P25 Gene

Orthologs for HMGB1P25 Gene

Evolution for HMGB1P25 Gene

ENSEMBL:
Gene Tree for HMGB1P25 (if available)
TreeFam:
Gene Tree for HMGB1P25 (if available)

No data available for Orthologs for HMGB1P25 Gene

Paralogs for HMGB1P25 Gene

No data available for Paralogs for HMGB1P25 Gene

Variants for HMGB1P25 Gene

Relevant External Links for HMGB1P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P25 Gene

Disorders for HMGB1P25 Gene

No disorders were found for HMGB1P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P25 Gene

Publications for HMGB1P25 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGB1P25 Gene

Sources for HMGB1P25 Gene

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