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Aliases for HMGB1P22 Gene

Aliases for HMGB1P22 Gene

  • High Mobility Group Box 1 Pseudogene 22 2 3 5
  • High-Mobility Group Box 1 Pseudogene 22 2

External Ids for HMGB1P22 Gene

Previous GeneCards Identifiers for HMGB1P22 Gene

  • GC00U931415
  • GC05P124600

Summaries for HMGB1P22 Gene

GeneCards Summary for HMGB1P22 Gene

HMGB1P22 (High Mobility Group Box 1 Pseudogene 22) is a Pseudogene.

Additional gene information for HMGB1P22 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P22 Gene

Genomics for HMGB1P22 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P22 Gene

Promoters and enhancers for HMGB1P22 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I125274 Enhancer 0.9 ENCODE 0.4 +9.8 9769 1.4 PKNOX1 ARNT FEZF1 ZNF2 ZNF488 ZNF518A ZNF610 GLIS1 PRDM4 WT1 HMGB1P22 ENSG00000281608 LOC101927421
GH05I125277 Enhancer 0.9 ENCODE 0.4 +12.5 12533 1.5 PKNOX1 FOXA2 FEZF1 ZNF2 FOS KLF13 SP3 YY2 TSHZ1 ZNF518A HMGB1P22 ENSG00000281608 LOC101927421
GH05I125261 Enhancer 0.4 ENCODE 0.8 -2.8 -2848 1.1 JUN ZNF248 HMGB1P22 GC05P125202 LOC101927421
GH05I125257 Enhancer 0.8 ENCODE 0.4 -7.9 -7880 0.2 PKNOX1 INSM2 MZF1 FEZF1 ZNF2 ZNF213 ZNF366 ZSCAN5C OVOL3 TSHZ1 HMGB1P22 GC05P125202 LOC101927421
GH05I125315 Enhancer 1.3 VISTA Ensembl 0.2 +51.7 51719 3 PKNOX1 FEZF1 ZNF2 YY1 GLIS2 ATF7 KLF13 SP3 RXRA TSHZ1 ENSG00000281608 HMGB1P22 LOC101927421
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P22 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P22 Gene

Genomic Locations for HMGB1P22 Gene
chr5:125,265,263-125,265,802
(GRCh38/hg38)
Size:
540 bases
Orientation:
Plus strand
chr5:124,600,956-124,601,495
(GRCh37/hg19)

Genomic View for HMGB1P22 Gene

Genes around HMGB1P22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P22 Gene

Proteins for HMGB1P22 Gene

Post-translational modifications for HMGB1P22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P22 Gene

Domains & Families for HMGB1P22 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P22 Gene

Function for HMGB1P22 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P22 Gene

Localization for HMGB1P22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P22 Gene

Pathways & Interactions for HMGB1P22 Gene

SuperPathways for HMGB1P22 Gene

No Data Available

Interacting Proteins for HMGB1P22 Gene

Gene Ontology (GO) - Biological Process for HMGB1P22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P22 Gene

Drugs & Compounds for HMGB1P22 Gene

No Compound Related Data Available

Transcripts for HMGB1P22 Gene

mRNA/cDNA for HMGB1P22 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P22 Gene

No ASD Table

Relevant External Links for HMGB1P22 Gene

GeneLoc Exon Structure for
HMGB1P22
ECgene alternative splicing isoforms for
HMGB1P22

Expression for HMGB1P22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P22 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P22 Gene:

HMGB1P22
genes like me logo Genes that share expression patterns with HMGB1P22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P22 Gene

Orthologs for HMGB1P22 Gene

Evolution for HMGB1P22 Gene

ENSEMBL:
Gene Tree for HMGB1P22 (if available)
TreeFam:
Gene Tree for HMGB1P22 (if available)

No data available for Orthologs for HMGB1P22 Gene

Paralogs for HMGB1P22 Gene

No data available for Paralogs for HMGB1P22 Gene

Variants for HMGB1P22 Gene

Additional Variant Information for HMGB1P22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P22 Gene

Disorders for HMGB1P22 Gene

No disorders were found for HMGB1P22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P22 Gene

Publications for HMGB1P22 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P22 Gene

Sources for HMGB1P22 Gene

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