Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMGB1P19 Gene

Subcategory (RNA class) for HMGB1P19 Gene

lncRNA

Aliases for HMGB1P19 Gene

  • High Mobility Group Box 1 Pseudogene 19 2 3 5
  • High-Mobility Group Box 1 Pseudogene 19 2

External Ids for HMGB1P19 Gene

ORGUL Members for HMGB1P19 Gene

Previous GeneCards Identifiers for HMGB1P19 Gene

  • GC00U931573
  • GC08P124136

Summaries for HMGB1P19 Gene

GeneCards Summary for HMGB1P19 Gene

HMGB1P19 (High Mobility Group Box 1 Pseudogene 19) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for HMGB1P19 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

Additional gene information for HMGB1P19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HMGB1P19 Gene

Genomics for HMGB1P19 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P19 Gene

Promoters and enhancers for HMGB1P19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I123072 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.2 -50.1 -50105 2 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZBTB7B YY1 POLR2B TBC1D31 DERL1 C8orf76 RNY4P5 HMGB1P19
GH08I123154 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 +31.8 31795 0.6 HDAC1 HDGF PKNOX1 ARID4B SIN3A RAD21 ARID2 FOS CREM ZNF654 FBXO32 PIR54534 HMGB1P19 TBC1D31
GH08I123148 Enhancer 1 ENCODE dbSUPER 0.3 +26.2 26178 1.4 TAF9B INSM2 TCF12 FOS ATF7 CREM ZBTB2 ZEB2 MTA1 SMARCA4 FAM83A FAM83A-AS1 ENSG00000221461 ENSG00000253258 TBC1D31 DERL1 ENSG00000238901 ENSG00000253607 RNU6-875P MIR548AA1
GH08I123057 Enhancer 1.1 Ensembl ENCODE 0.2 -65.1 -65071 1.7 FOXA2 PKNOX1 ATF1 BRCA1 YY1 ZNF766 FOS ATF7 RXRA REST DERL1 RNY4P5 TBC1D31 HMGB1P19
GH08I123065 Enhancer 1.1 Ensembl ENCODE 0.2 -57.3 -57306 0.4 HDGF ARNT ZNF133 FEZF1 ZBTB7B TCF12 E2F8 ARID2 ZNF143 ATF7 DERL1 TBC1D31 ENSG00000238901 ENSG00000253607 FAM83A-AS1 RNY4P5 HMGB1P19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P19 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P19 Gene

Genomic Locations for HMGB1P19 Gene
chr8:123,123,106-123,123,684
(GRCh38/hg38)
Size:
579 bases
Orientation:
Plus strand
chr8:124,135,346-124,135,924
(GRCh37/hg19)

Genomic View for HMGB1P19 Gene

Genes around HMGB1P19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P19 Gene

ORGUL Member Location for HMGB1P19 Gene

ORGUL Member Location for HMGB1P19 gene

Proteins for HMGB1P19 Gene

Post-translational modifications for HMGB1P19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P19 Gene

Domains & Families for HMGB1P19 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P19 Gene

Function for HMGB1P19 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P19 Gene

Localization for HMGB1P19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P19 Gene

Pathways & Interactions for HMGB1P19 Gene

SuperPathways for HMGB1P19 Gene

No Data Available

Interacting Proteins for HMGB1P19 Gene

Gene Ontology (GO) - Biological Process for HMGB1P19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P19 Gene

Drugs & Compounds for HMGB1P19 Gene

No Compound Related Data Available

Transcripts for HMGB1P19 Gene

mRNA/cDNA for HMGB1P19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P19 Gene

No ASD Table

Relevant External Links for HMGB1P19 Gene

GeneLoc Exon Structure for
HMGB1P19
ECgene alternative splicing isoforms for
HMGB1P19

Expression for HMGB1P19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P19 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P19 Gene

This gene is overexpressed in Brain - Cerebellum (x6.2) and Brain - Cerebellar Hemisphere (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P19 Gene:

HMGB1P19
genes like me logo Genes that share expression patterns with HMGB1P19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P19 Gene

Orthologs for HMGB1P19 Gene

Evolution for HMGB1P19 Gene

ENSEMBL:
Gene Tree for HMGB1P19 (if available)
TreeFam:
Gene Tree for HMGB1P19 (if available)

No data available for Orthologs for HMGB1P19 Gene

Paralogs for HMGB1P19 Gene

No data available for Paralogs for HMGB1P19 Gene

Variants for HMGB1P19 Gene

Additional Variant Information for HMGB1P19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P19 Gene

Disorders for HMGB1P19 Gene

No disorders were found for HMGB1P19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P19 Gene

Publications for HMGB1P19 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for HMGB1P19 Gene

Sources for HMGB1P19 Gene

Content
Loading form....