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Aliases for HMGB1P19 Gene

Subcategory (RNA class) for HMGB1P19 Gene

lncRNA

Aliases for HMGB1P19 Gene

  • High Mobility Group Box 1 Pseudogene 19 2 3 5
  • High-Mobility Group Box 1 Pseudogene 19 2

External Ids for HMGB1P19 Gene

ORGUL Members for HMGB1P19 Gene

Previous GeneCards Identifiers for HMGB1P19 Gene

  • GC00U931573
  • GC08P124136

Summaries for HMGB1P19 Gene

GeneCards Summary for HMGB1P19 Gene

HMGB1P19 (High Mobility Group Box 1 Pseudogene 19) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for HMGB1P19 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HMGB1P19 Gene

Genomics for HMGB1P19 Gene

Regulatory Elements for HMGB1P19 Gene

Enhancers for HMGB1P19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G123154 1.4 FANTOM5 Ensembl ENCODE 0.3 +31.8 31795 0.6 HDAC1 HDGF PKNOX1 CBX3 ARID4B SIN3A RAD21 GATA2 ZNF143 FOS FBXO32 PIR54534 HMGB1P19
GH08G123148 1.1 ENCODE dbSUPER 0.3 +26.2 26178 1.4 INSM2 TCF12 FOS CREM ZBTB2 JUNB ZEB2 REST MTA1 SMARCA4 FAM83A FAM83A-AS1 ENSG00000221461 ENSG00000253258 DERL1 TBC1D31 ENSG00000238901 ENSG00000253607 RNU6-875P MIR548AA1
GH08G123112 0.6 ENCODE 0.4 -10.4 -10358 0.9 PKNOX1 L3MBTL2 NFIB DPF2 FOXA1 GATA3 NFIC GATA2 ZSCAN29 TBC1D31 DERL1 HMGB1P19 RNY4P5
GH08G123065 1.2 Ensembl ENCODE 0.2 -57.3 -57306 0.4 HDAC1 HDGF CREB3L1 ARNT ZNF133 FEZF1 ZBTB40 ZBTB7B RAD21 ZNF335 DERL1 TBC1D31 ENSG00000238901 ENSG00000253607 FAM83A-AS1 RNY4P5 HMGB1P19
GH08G123057 1.2 Ensembl ENCODE 0.2 -65.1 -65071 1.7 PKNOX1 ATF1 CREB3L1 BRCA1 YY1 ZNF766 FOS ZNF488 ZNF518A MEF2D DERL1 RNY4P5 HMGB1P19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P19 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P19 Gene

Chromosome:
8
Start:
123,123,106 bp from pter
End:
123,123,684 bp from pter
Size:
579 bases
Orientation:
Plus strand

Genomic View for HMGB1P19 Gene

Genes around HMGB1P19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P19 Gene

ORGUL Member Location for HMGB1P19 Gene

ORGUL Member Location for HMGB1P19 gene

Proteins for HMGB1P19 Gene

Post-translational modifications for HMGB1P19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P19 Gene

Domains & Families for HMGB1P19 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P19 Gene

Function for HMGB1P19 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P19 Gene

Localization for HMGB1P19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P19 Gene

Pathways & Interactions for HMGB1P19 Gene

SuperPathways for HMGB1P19 Gene

No Data Available

Interacting Proteins for HMGB1P19 Gene

Gene Ontology (GO) - Biological Process for HMGB1P19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P19 Gene

Drugs & Compounds for HMGB1P19 Gene

No Compound Related Data Available

Transcripts for HMGB1P19 Gene

mRNA/cDNA for HMGB1P19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P19 Gene

No ASD Table

Relevant External Links for HMGB1P19 Gene

GeneLoc Exon Structure for
HMGB1P19
ECgene alternative splicing isoforms for
HMGB1P19

Expression for HMGB1P19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P19 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P19 Gene

This gene is overexpressed in Brain - Cerebellum (x6.2) and Brain - Cerebellar Hemisphere (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P19 Gene:

HMGB1P19
genes like me logo Genes that share expression patterns with HMGB1P19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P19 Gene

Orthologs for HMGB1P19 Gene

Evolution for HMGB1P19 Gene

ENSEMBL:
Gene Tree for HMGB1P19 (if available)
TreeFam:
Gene Tree for HMGB1P19 (if available)

No data available for Orthologs for HMGB1P19 Gene

Paralogs for HMGB1P19 Gene

No data available for Paralogs for HMGB1P19 Gene

Variants for HMGB1P19 Gene

Relevant External Links for HMGB1P19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P19 Gene

Disorders for HMGB1P19 Gene

No disorders were found for HMGB1P19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P19 Gene

Publications for HMGB1P19 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for HMGB1P19 Gene

Sources for HMGB1P19 Gene

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