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Aliases for HMGB1P13 Gene

Subcategory (RNA class) for HMGB1P13 Gene

lncRNA

Aliases for HMGB1P13 Gene

  • High Mobility Group Box 1 Pseudogene 13 2 3 5
  • High-Mobility Group Box 1-Like 13 2 3
  • High-Mobility Group Box 1 Pseudogene 13 2
  • High-Mobility Group Box 2 Pseudogene 3
  • HMGB1L13 3

External Ids for HMGB1P13 Gene

ORGUL Members for HMGB1P13 Gene

Previous HGNC Symbols for HMGB1P13 Gene

  • HMGB1L13

Previous GeneCards Identifiers for HMGB1P13 Gene

  • GC06M133190

Summaries for HMGB1P13 Gene

GeneCards Summary for HMGB1P13 Gene

HMGB1P13 (High Mobility Group Box 1 Pseudogene 13) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HMGB1P13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P13 Gene

Genomics for HMGB1P13 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P13 Gene

Promoters and enhancers for HMGB1P13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I132820 Enhancer 0.9 Ensembl ENCODE 0.2 +47.8 47793 0.9 PAF1 HNRNPUL1 MEIS2 ZNF362 ZBED1 ZNF384 SSRP1 POLR2B POLR2A IKZF1 SLC18B1 RPS12 SNORA33 HMGB1P13
GH06I132823 Enhancer 0.7 ENCODE 0.2 +45.7 45702 0.2 CTCF TFAP4 PKNOX1 ETV1 ARID4B RAD21 ZNF335 GATA3 POLR2A ZBTB48 SNORA33 HMGB1P13
GH06I132821 Enhancer 0.7 ENCODE 0.2 +49.2 49172 0.2 ZBED1 HMG20A RELA FOSL1 SSRP1 POLR2B JUND KLF16 POLR2A MYNN SLC18B1 SNORA33 HMGB1P13
GH06I132819 Enhancer 0.6 ENCODE 0.2 +49.7 49672 0.2 PAF1 ZBED1 HMG20A ZNF48 SSRP1 POLR2B KLF16 POLR2A NFATC1 MYNN GC06P132819 GC06P132822 SNORA33 SLC18B1 HMGB1P13
GH06I132822 Enhancer 0.6 ENCODE 0.2 +49.4 49382 0.2 ZBED1 HMG20A ZNF48 FOSL1 SSRP1 POLR2B KLF16 POLR2A MYNN CREB1 SNORA33 HMGB1P13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P13 Gene

Genomic Locations for HMGB1P13 Gene
chr6:132,868,218-132,868,859
(GRCh38/hg38)
Size:
642 bases
Orientation:
Minus strand
chr6:133,189,357-133,189,998
(GRCh37/hg19)

Genomic View for HMGB1P13 Gene

Genes around HMGB1P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P13 Gene

Proteins for HMGB1P13 Gene

Post-translational modifications for HMGB1P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P13 Gene

Domains & Families for HMGB1P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P13 Gene

Function for HMGB1P13 Gene

Phenotypes From GWAS Catalog for HMGB1P13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P13 Gene

Localization for HMGB1P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P13 Gene

Pathways & Interactions for HMGB1P13 Gene

SuperPathways for HMGB1P13 Gene

No Data Available

Interacting Proteins for HMGB1P13 Gene

Gene Ontology (GO) - Biological Process for HMGB1P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P13 Gene

Drugs & Compounds for HMGB1P13 Gene

No Compound Related Data Available

Transcripts for HMGB1P13 Gene

mRNA/cDNA for HMGB1P13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P13 Gene

No ASD Table

Relevant External Links for HMGB1P13 Gene

GeneLoc Exon Structure for
HMGB1P13
ECgene alternative splicing isoforms for
HMGB1P13

Expression for HMGB1P13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P13 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P13 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x15.7), Brain - Caudate (basal ganglia) (x5.6), Brain - Cerebellum (x4.8), Brain - Hippocampus (x4.3), and Brain - Amygdala (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P13 Gene:

HMGB1P13
genes like me logo Genes that share expression patterns with HMGB1P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P13 Gene

Orthologs for HMGB1P13 Gene

Evolution for HMGB1P13 Gene

ENSEMBL:
Gene Tree for HMGB1P13 (if available)
TreeFam:
Gene Tree for HMGB1P13 (if available)

No data available for Orthologs for HMGB1P13 Gene

Paralogs for HMGB1P13 Gene

No data available for Paralogs for HMGB1P13 Gene

Variants for HMGB1P13 Gene

Additional Variant Information for HMGB1P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P13 Gene

Disorders for HMGB1P13 Gene

No disorders were found for HMGB1P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P13 Gene

Publications for HMGB1P13 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P13 Gene

Sources for HMGB1P13 Gene

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