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HMGB1P10 Gene(Pseudogene)

High Mobility Group Box 1 Pseudogene 10

GCID:
GC22P026560
GIFtS:
16
Genes Participants
UDN Logo

Aliases for HMGB1P10 Gene

Aliases for HMGB1P10 Gene

  • High Mobility Group Box 1 Pseudogene 10 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 10 2 3
  • High-Mobility Group Box 1-Like 10 2 3
  • High-Mobility Group Box 1 Pseudogene 10 2
  • BK445C9.3 3
  • HMGB1L10 3
  • HMG1L10 3

External Ids for HMGB1P10 Gene

Previous HGNC Symbols for HMGB1P10 Gene

  • HMG1L10
  • HMGB1L10

Previous GeneCards Identifiers for HMGB1P10 Gene

  • GC22P026957

Summaries for HMGB1P10 Gene

GeneCards Summary for HMGB1P10 Gene

HMGB1P10 (High Mobility Group Box 1 Pseudogene 10) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P10 Gene

Genomics for HMGB1P10 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGB1P10 Gene

Enhancers for HMGB1P10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G026647 1.7 FANTOM5 Ensembl ENCODE dbSUPER 19.3 +88.1 88100 2.1 MXI1 SUZ12 MAX SIN3A RBBP5 RAD21 ZNF366 POLR2A SCRT2 SMC3 TPST2 HMGB1P10 HPS4 SRRD MIR548J CRYBB1 CRYBA4 TFIP11 MIAT MIATNB
GH22G026631 1.5 FANTOM5 ENCODE dbSUPER 19.9 +72.2 72212 3.0 ATF1 ARNT TCF12 ZNF766 ELK1 GATA2 CAVIN1 NCOA1 REST ZNF592 TPST2 HMGB1P10 CRYBA4 MIR548J TFIP11 HPS4 SRRD MIATNB CRYBB1 ISCA2P1
GH22G026549 1.3 Ensembl ENCODE dbSUPER 20.6 -7.5 -7511 6.1 BCOR SAP130 TAF1 ZMYM3 MAX ZNF384 ZIC2 YY1 ZNF121 ZFHX2 HMGB1P10 TPST2 MIR548J GC22M026522
GH22G026560 0.8 Ensembl ENCODE dbSUPER 30.6 -0.1 -123 0.6 HMGB1P10 TFIP11 MIR548J
GH22G026572 1.4 Ensembl ENCODE dbSUPER 16.6 +13.5 13455 2.5 HDAC1 PKNOX1 ATF1 SIN3A RAD21 ZBTB40 TCF12 ZNF766 ELK1 ZNF143 HMGB1P10 TPST2 CRYBA4 CRYBB1 TFIP11 LOC100507599
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P10 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P10 Gene

Chromosome:
22
Start:
26,560,428 bp from pter
End:
26,561,616 bp from pter
Size:
1,189 bases
Orientation:
Plus strand

Genomic View for HMGB1P10 Gene

Genes around HMGB1P10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P10 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGB1P10 Gene

Proteins for HMGB1P10 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGB1P10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P10 Gene

Domains & Families for HMGB1P10 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P10 Gene

Function for HMGB1P10 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P10 Gene

Localization for HMGB1P10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P10 Gene

Pathways & Interactions for HMGB1P10 Gene

SuperPathways for HMGB1P10 Gene

PathCards logo More details on SuperPathways for HMGB1P10
No Data Available

Interacting Proteins for HMGB1P10 Gene

Gene Ontology (GO) - Biological Process for HMGB1P10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P10 Gene

Drugs & Compounds for HMGB1P10 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGB1P10 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGB1P10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P10 Gene

No ASD Table

Relevant External Links for HMGB1P10 Gene

GeneLoc Exon Structure for
HMGB1P10
ECgene alternative splicing isoforms for
HMGB1P10

Expression for HMGB1P10 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P10 Gene

mRNA expression in normal human tissues for HMGB1P10 Gene
mRNA expression by GTEx for HMGB1P10 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P10 Gene:

HMGB1P10
genes like me logo Genes that share expression patterns with HMGB1P10: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P10 Gene

Orthologs for HMGB1P10 Gene

Evolution for HMGB1P10 Gene

ENSEMBL:
Gene Tree for HMGB1P10 (if available)
TreeFam:
Gene Tree for HMGB1P10 (if available)

No data available for Orthologs for HMGB1P10 Gene

Paralogs for HMGB1P10 Gene

No data available for Paralogs for HMGB1P10 Gene

Variants for HMGB1P10 Gene

Relevant External Links for HMGB1P10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P10 Gene

Disorders for HMGB1P10 Gene

Relevant External Links for HMGB1P10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMGB1P10

No disorders were found for HMGB1P10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGB1P10 Gene

Publications for HMGB1P10 Gene

  1. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 2 3 64
  2. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi D.J. … Shiio Y. (J. Proteome Res. 2014) 3 64
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3 64
  4. Complementary quantitative proteomics reveals that transcription factor AP-4 mediates E-box-dependent complex formation for transcriptional repression of HDM2. (PMID: 19505873) Ku W.C. … Chen Y.J. (Mol. Cell Proteomics 2009) 3 64
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3 64

Products for HMGB1P10 Gene

Sources for HMGB1P10 Gene

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