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HMGB1P1 Gene(Pseudogene)

High Mobility Group Box 1 Pseudogene 1

GCID:
GC20M057487
GIFtS:
23
Genes Participants
UDN Logo

Aliases for HMGB1P1 Gene

Aliases for HMGB1P1 Gene

  • High Mobility Group Box 1 Pseudogene 1 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 1 2 3
  • High-Mobility Group Box 1-Like 1 2 3
  • HMGB1L1 3 4
  • HMG1L1 3 4
  • Putative High Mobility Group Protein 1-Like 1 4
  • High Mobility Group Protein B1 Pseudogene 1 4
  • High-Mobility Group Box 1 Pseudogene 1 2
  • DJ579F20.1 3
  • HMG-1L1 4
  • HMG1L7 3

External Ids for HMGB1P1 Gene

Previous HGNC Symbols for HMGB1P1 Gene

  • HMG1L1
  • HMGB1L1

Previous GeneCards Identifiers for HMGB1P1 Gene

  • GC20M056062

Summaries for HMGB1P1 Gene

Entrez Gene Summary for HMGB1P1 Gene

  • This gene may represent an evolving retropseudogene of the high-mobility group box 1 gene, which has multiple pseudogenes. This gene has an intact open reading frame, where the length of encoded protein is conserved, compared to the high-mobility group box 1 protein. However, due to the lack of conclusive evidence for specific transcription at this location, this locus is currently represented as a pseudogene. [provided by RefSeq, Jan 2010]

GeneCards Summary for HMGB1P1 Gene

HMGB1P1 (High Mobility Group Box 1 Pseudogene 1) is a Pseudogene.

UniProtKB/Swiss-Prot for HMGB1P1 Gene

  • Binds preferentially single-stranded DNA and unwinds double-stranded DNA.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P1 Gene

Genomics for HMGB1P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGB1P1 Gene

Enhancers for HMGB1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G056803 1.5 FANTOM5 ENCODE dbSUPER 14.7 +684.2 684174 2.0 HDGF PKNOX1 NFIB ZSCAN4 SIN3A YBX1 PLRG1 BMI1 RAD21 ZBTB40 HMGB1P1 PTMAP6 TFAP2C GC20M056786 RNU6-929P LOC105372683
GH20G056786 1.8 FANTOM5 Ensembl ENCODE dbSUPER 9.9 +700.5 700536 5.1 PKNOX1 FOXA2 SIN3A BRCA1 ZNF48 ZBTB7B YY1 GTF3C2 ZNF207 ZNF143 CSTF1 TFAP2C HMGB1P1 AURKA GC20M056786 RNU6-929P LOC105372683
GH20G057464 1.4 Ensembl ENCODE dbSUPER 10.2 +24.2 24243 0.6 CBX3 SIN3A RAD21 RARA TCF12 HSF1 ZNF207 SMARCC2 RCOR1 THAP11 LOC100291105 RBM38 HMGB1P1 LOC105372688
GH20G057159 0.9 VISTA ENCODE 14.7 +328.1 328137 3.1 BCOR CEBPB ZMYM3 NFXL1 PLRG1 ATM SCRT2 KDM1A ETV6 HMGB1P1 ENSG00000280220 LOC105372685
GH20G057495 1.4 Ensembl ENCODE dbSUPER 8.8 -6.2 -6150 0.6 HDAC1 ELF3 PKNOX1 ARNT SIN3A NFXL1 ZBTB40 ZSCAN9 RAD21 ZEB1 LOC100291105 RBM38 MTND1P9 MTRNR2L3 RAE1 CTCFL PCK1 HMGB1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGB1P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGB1P1 Gene

Chromosome:
20
Start:
57,487,941 bp from pter
End:
57,489,130 bp from pter
Size:
1,190 bases
Orientation:
Minus strand

Genomic View for HMGB1P1 Gene

Genes around HMGB1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGB1P1 Gene

Proteins for HMGB1P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for HMGB1P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B2RPK0-HGB1A_HUMAN
    Recommended name:
    Putative high mobility group protein B1-like 1
    Protein Accession:
    B2RPK0

    Protein attributes for HMGB1P1 Gene

    Size:
    211 amino acids
    Molecular mass:
    24238 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HMGB1P1 Gene

Protein Expression for HMGB1P1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for HMGB1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P1 Gene

Domains & Families for HMGB1P1 Gene

Protein Domains for HMGB1P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for HMGB1P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

B2RPK0

UniProtKB/Swiss-Prot:

HGB1A_HUMAN :
  • Belongs to the HMGB family.
Family:
  • Belongs to the HMGB family.
genes like me logo Genes that share domains with HMGB1P1: view

No data available for Gene Families for HMGB1P1 Gene

Function for HMGB1P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for HMGB1P1 Gene

UniProtKB/Swiss-Prot Function:
Binds preferentially single-stranded DNA and unwinds double-stranded DNA.
genes like me logo Genes that share phenotypes with HMGB1P1: view

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P1 Gene

Localization for HMGB1P1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HMGB1P1 Gene

Nucleus. Chromosome.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGB1P1 Gene

Pathways & Interactions for HMGB1P1 Gene

SuperPathways for HMGB1P1 Gene

PathCards logo More details on SuperPathways for HMGB1P1
No Data Available

Interacting Proteins for HMGB1P1 Gene

Selected Interacting proteins: B2RPK0-HGB1A_HUMAN for HMGB1P1 Gene via IID

Gene Ontology (GO) - Biological Process for HMGB1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P1 Gene

Drugs & Compounds for HMGB1P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGB1P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGB1P1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P1 Gene

No ASD Table

Relevant External Links for HMGB1P1 Gene

GeneLoc Exon Structure for
HMGB1P1
ECgene alternative splicing isoforms for
HMGB1P1

Expression for HMGB1P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P1 Gene

mRNA expression in normal human tissues for HMGB1P1 Gene
mRNA expression by GTEx for HMGB1P1 Gene

Protein differential expression in normal tissues from HIPED for HMGB1P1 Gene

This gene is overexpressed in Blymphocyte (25.5), Liver (10.5), Peripheral blood mononuclear cells (7.1), Monocytes (7.0), Nasal epithelium (6.3), and Cervix (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for HMGB1P1 Gene



Protein tissue co-expression partners for HMGB1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P1 Gene:

HMGB1P1
genes like me logo Genes that share expression patterns with HMGB1P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P1 Gene

Orthologs for HMGB1P1 Gene

Evolution for HMGB1P1 Gene

ENSEMBL:
Gene Tree for HMGB1P1 (if available)
TreeFam:
Gene Tree for HMGB1P1 (if available)

No data available for Orthologs for HMGB1P1 Gene

Paralogs for HMGB1P1 Gene

(8) SIMAP similar genes for HMGB1P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with HMGB1P1: view

No data available for Paralogs for HMGB1P1 Gene

Variants for HMGB1P1 Gene

Relevant External Links for HMGB1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P1 Gene

Disorders for HMGB1P1 Gene

No disorders were found for HMGB1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P1 Gene

Publications for HMGB1P1 Gene

  1. Mapping and molecular characterization of five HMG1-related DNA sequences. (PMID: 9925949) Rogalla P. … Bullerdiek J. (Cytogenet. Cell Genet. 1998) 2 3 64
  2. ABCE1 is a highly conserved RNA silencing suppressor. (PMID: 25659154) KAorblane K. … Sarmiento C. (PLoS ONE 2015) 3 64
  3. Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India. (PMID: 23300278) Saxena R. … Sanghera D.K. (Diabetes 2013) 3 64
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  5. Replication of previous genome-wide association studies of bone mineral density in premenopausal American women. (PMID: 20200978) Ichikawa S. … Econs M.J. (J. Bone Miner. Res. 2010) 3 64

Products for HMGB1P1 Gene

Sources for HMGB1P1 Gene

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