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Aliases for HMGA1P7 Gene

Aliases for HMGA1P7 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 7 2 3 5
  • High Mobility Group AT-Hook 1-Like 7 2 3
  • HMGA1L7 3

External Ids for HMGA1P7 Gene

Previous HGNC Symbols for HMGA1P7 Gene

  • HMGA1L7

Previous GeneCards Identifiers for HMGA1P7 Gene

  • GC06U902113
  • GC06M134437

Summaries for HMGA1P7 Gene

GeneCards Summary for HMGA1P7 Gene

HMGA1P7 (High Mobility Group AT-Hook 1 Pseudogene 7) is a Pseudogene.

Additional gene information for HMGA1P7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P7 Gene

Genomics for HMGA1P7 Gene

Regulatory Elements for HMGA1P7 Gene

Enhancers for HMGA1P7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H134109 1.3 FANTOM5 ENCODE 0.4 +8.0 8018 0.3 PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 FOS SP3 REST ZNF662 KAT8 ENSG00000229722 LOC101928277 ENSG00000240056 SLC2A12 SGK1 HMGA1P7
GH06H134117 0.7 ENCODE 0.7 +0.0 15 0.7 SMARCE1 PKNOX1 DPF2 FOXA1 ZNF217 E2F1 ZFHX2 CTBP1 GATA3 POLR2A HMGA1P7 SLC2A12
GH06H134123 0.8 ENCODE 0.4 -6.1 -6108 0.2 HDAC1 CTCF MXI1 ATF1 NFRKB MAX CEBPG ZNF2 ZBTB40 RAD21 ENSG00000240056 HMGA1P7 GC06P134134
GH06H134111 0.8 ENCODE 0.4 +6.4 6443 0.2 CTCF ARNT ZNF2 RAD21 TEAD3 ZNF121 CC2D1A SMC3 ZNF143 NFE2 HMGA1P7 SLC2A12
GH06H134124 0.8 ENCODE 0.4 -6.4 -6369 0.3 HDAC1 CTCF MXI1 ATF1 NFRKB MAX CEBPG ZNF2 RAD21 YY1 ENSG00000240056 HMGA1P7 GC06P134134
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGA1P7 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGA1P7 Gene

Genomic Locations for HMGA1P7 Gene
chr6:134,113,962-134,117,680
(GRCh38/hg38)
Size:
3,719 bases
Orientation:
Minus strand
chr6:134,435,100-134,438,818
(GRCh37/hg19)

Genomic View for HMGA1P7 Gene

Genes around HMGA1P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P7 Gene

Proteins for HMGA1P7 Gene

Post-translational modifications for HMGA1P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P7 Gene

Domains & Families for HMGA1P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P7 Gene

Function for HMGA1P7 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P7 Gene

Localization for HMGA1P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGA1P7 Gene

Pathways & Interactions for HMGA1P7 Gene

SuperPathways for HMGA1P7 Gene

No Data Available

Interacting Proteins for HMGA1P7 Gene

Gene Ontology (GO) - Biological Process for HMGA1P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P7 Gene

Drugs & Compounds for HMGA1P7 Gene

No Compound Related Data Available

Transcripts for HMGA1P7 Gene

mRNA/cDNA for HMGA1P7 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HMGA1P7 Gene

High mobility group AT-hook 1 pseudogene 7:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P7 Gene

No ASD Table

Relevant External Links for HMGA1P7 Gene

GeneLoc Exon Structure for
HMGA1P7
ECgene alternative splicing isoforms for
HMGA1P7

Expression for HMGA1P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGA1P7 Gene

mRNA differential expression in normal tissues according to GTEx for HMGA1P7 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x7.2), Brain - Putamen (basal ganglia) (x6.9), Brain - Hippocampus (x6.0), Brain - Caudate (basal ganglia) (x5.8), Brain - Substantia nigra (x5.5), Brain - Amygdala (x5.2), and Brain - Hypothalamus (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P7 Gene:

HMGA1P7

SOURCE GeneReport for Unigene cluster for HMGA1P7 Gene:

Hs.571061
genes like me logo Genes that share expression patterns with HMGA1P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P7 Gene

Orthologs for HMGA1P7 Gene

Evolution for HMGA1P7 Gene

ENSEMBL:
Gene Tree for HMGA1P7 (if available)
TreeFam:
Gene Tree for HMGA1P7 (if available)

No data available for Orthologs for HMGA1P7 Gene

Paralogs for HMGA1P7 Gene

No data available for Paralogs for HMGA1P7 Gene

Variants for HMGA1P7 Gene

Sequence variations from dbSNP and Humsavar for HMGA1P7 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000741507 -- 134,116,332(+) CTTTT(C/T)GTATA intron-variant
rs1001518146 -- 134,117,592(+) TGGAA(C/G)TGGCT intron-variant, nc-transcript-variant
rs1002522881 -- 134,118,701(+) TAATC(A/C)CAGTT intron-variant, upstream-variant-2KB
rs1002809988 -- 134,116,722(+) GGAAA(C/T)TCCAT intron-variant
rs1004006465 -- 134,115,205(+) CTGTC(C/G/T)GGTCC intron-variant, nc-transcript-variant

Relevant External Links for HMGA1P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P7 Gene

Disorders for HMGA1P7 Gene

Relevant External Links for HMGA1P7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMGA1P7

No disorders were found for HMGA1P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGA1P7 Gene

Publications for HMGA1P7 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 60
  2. HMGA1P7-pseudogene regulates H19 and Igf2 expression by a competitive endogenous RNA mechanism. (PMID: 27874091) De Martino M … Esposito F (Scientific reports 2016) 3 60
  3. HMGA1-pseudogene expression is induced in human pituitary tumors. (PMID: 25894544) Esposito F … Fusco A (Cell cycle (Georgetown, Tex.) 2015) 3 60
  4. HMGA1 pseudogenes as candidate proto-oncogenic competitive endogenous RNAs. (PMID: 25268743) Esposito F … Fusco A (Oncotarget 2014) 3 60
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for HMGA1P7 Gene

Sources for HMGA1P7 Gene

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