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Aliases for HMGA1P7 Gene

Aliases for HMGA1P7 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 7 2 3
  • High Mobility Group AT-Hook 1-Like 7 2 3
  • HMGA1L7 3

External Ids for HMGA1P7 Gene

Previous HGNC Symbols for HMGA1P7 Gene

  • HMGA1L7

Previous GeneCards Identifiers for HMGA1P7 Gene

  • GC06U902113
  • GC06M134437

Summaries for HMGA1P7 Gene

GeneCards Summary for HMGA1P7 Gene

HMGA1P7 (High Mobility Group AT-Hook 1 Pseudogene 7) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P7 Gene

Genomics for HMGA1P7 Gene

Genomic Location for HMGA1P7 Gene

Start:
134,113,962 bp from pter
End:
134,117,680 bp from pter
Size:
3,719 bases
Orientation:
Minus strand

Genomic View for HMGA1P7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HMGA1P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P7 Gene

No data available for Regulatory Elements for HMGA1P7 Gene

Proteins for HMGA1P7 Gene

Post-translational modifications for HMGA1P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P7 Gene

Domains for HMGA1P7 Gene

Gene Families for HMGA1P7 Gene

HGNC:
  • HMGA1P :High mobility group / AT-hook pseudogenes

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HMGA1P7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P7 Gene

Function for HMGA1P7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HMGA1P7 Gene

Localization for HMGA1P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGA1P7 Gene

Pathways for HMGA1P7 Gene

SuperPathways for HMGA1P7 Gene

No Data Available

Interacting Proteins for HMGA1P7 Gene

Gene Ontology (GO) - Biological Process for HMGA1P7 Gene

None

No data available for Pathways by source for HMGA1P7 Gene

Transcripts for HMGA1P7 Gene

mRNA/cDNA for HMGA1P7 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HMGA1P7 Gene

High mobility group AT-hook 1 pseudogene 7:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P7 Gene

No ASD Table

Relevant External Links for HMGA1P7 Gene

GeneLoc Exon Structure for
HMGA1P7
ECgene alternative splicing isoforms for
HMGA1P7

Expression for HMGA1P7 Gene

mRNA expression in normal human tissues for HMGA1P7 Gene

mRNA differential expression in normal tissues according to GTEx for HMGA1P7 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (7.2), Brain - Putamen (basal ganglia) (6.9), Brain - Hippocampus (6.0), Brain - Caudate (basal ganglia) (5.8), Brain - Substantia nigra (5.5), Brain - Amygdala (5.2), and Brain - Hypothalamus (4.4).

SOURCE GeneReport for Unigene cluster for HMGA1P7 Gene Hs.571061

genes like me logo Genes that share expressions with HMGA1P7: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HMGA1P7 Gene

Orthologs for HMGA1P7 Gene

Evolution for HMGA1P7 Gene

ENSEMBL:
Gene Tree for HMGA1P7 (if available)
TreeFam:
Gene Tree for HMGA1P7 (if available)

No data available for Orthologs for HMGA1P7 Gene

Paralogs for HMGA1P7 Gene

No data available for Paralogs for HMGA1P7 Gene

Variants for HMGA1P7 Gene

Sequence variations from dbSNP and Humsavar for HMGA1P7 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs4385329 -- 134,116,247(+) cttga(A/G)gcctc intron-variant
rs4429965 -- 134,119,303(+) GGAAA(C/T)TCCCT upstream-variant-2KB
rs4429966 -- 134,119,481(+) TATAA(C/T)AAGGA upstream-variant-2KB
rs4524619 -- 134,116,187(+) TCTCA(A/G)GTTAT intron-variant
rs6915898 -- 134,114,639(+) GCTGG(A/G)GCCCC nc-transcript-variant

Relevant External Links for HMGA1P7 Gene

HapMap Linkage Disequilibrium report
HMGA1P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HMGA1P7 Gene

Disorders for HMGA1P7 Gene

No disorders were found for HMGA1P7 Gene.

No data available for UniProtKB/Swiss-Prot for HMGA1P7 Gene

Publications for HMGA1P7 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. HMGA1 pseudogenes as candidate proto-oncogenic competitive endogenous RNAs. (PMID: 25268743) Esposito F. … Fusco A. (Oncotarget 2014) 3

Products for HMGA1P7 Gene

Sources for HMGA1P7 Gene

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