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Aliases for HMGA1P7 Gene

Aliases for HMGA1P7 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 7 2 3 5
  • High Mobility Group AT-Hook 1-Like 7 2 3
  • HMGA1L7 3

External Ids for HMGA1P7 Gene

Previous HGNC Symbols for HMGA1P7 Gene

  • HMGA1L7

Previous GeneCards Identifiers for HMGA1P7 Gene

  • GC06U902113
  • GC06M134437

Summaries for HMGA1P7 Gene

GeneCards Summary for HMGA1P7 Gene

HMGA1P7 (High Mobility Group AT-Hook 1 Pseudogene 7) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P7 Gene

Genomics for HMGA1P7 Gene

Regulatory Elements for HMGA1P7 Gene

Enhancers for HMGA1P7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F134117 0.9 Ensembl ENCODE 0.8 +0.1 87 0.9 PKNOX1 BHLHE40 DPF2 ZNF217 E2F1 ZFHX2 CTBP1 GATA3 SMARCA4 POLR2A HMGA1P7 SLC2A12
GH06F134109 1.6 FANTOM5 Ensembl ENCODE 0.4 +7.9 7880 0.8 PKNOX1 SIN3A FEZF1 ZNF2 GLIS2 FOS SP3 REST TSHZ1 ZNF488 ENSG00000229722 LOC101928277 ENSG00000240056 LINC01312 SLC2A12 SGK1 HMGA1P7
GH06F134077 1.1 Ensembl ENCODE 0.3 +39.8 39766 1.7 HDAC1 PKNOX1 ATF1 CHAMP1 ZNF766 ETV6 FOS EGR2 JUNB ELF1 SLC2A12 TBPL1 HMGA1P7
GH06F134123 0.8 ENCODE 0.4 -6.1 -6108 0.2 CTCF HDAC1 ATF1 NFRKB MAX ZBTB40 ZNF2 RAD21 YY1 ZNF101 ENSG00000240056 GC06P134134 HMGA1P7
GH06F134111 0.8 ENCODE 0.4 +6.4 6443 0.2 CTCF ARNT ZNF48 ZNF2 RAD21 TEAD3 ZNF121 ZNF143 SMC3 NFE2 HMGA1P7 SLC2A12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGA1P7 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGA1P7 Gene

Chromosome:
6
Start:
134,113,962 bp from pter
End:
134,117,680 bp from pter
Size:
3,719 bases
Orientation:
Minus strand

Genomic View for HMGA1P7 Gene

Genes around HMGA1P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P7 Gene

Proteins for HMGA1P7 Gene

Post-translational modifications for HMGA1P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P7 Gene

Domains & Families for HMGA1P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P7 Gene

Function for HMGA1P7 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P7 Gene

Localization for HMGA1P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGA1P7 Gene

Pathways & Interactions for HMGA1P7 Gene

SuperPathways for HMGA1P7 Gene

No Data Available

Interacting Proteins for HMGA1P7 Gene

Gene Ontology (GO) - Biological Process for HMGA1P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P7 Gene

Transcripts for HMGA1P7 Gene

mRNA/cDNA for HMGA1P7 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HMGA1P7 Gene

High mobility group AT-hook 1 pseudogene 7:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P7 Gene

No ASD Table

Relevant External Links for HMGA1P7 Gene

GeneLoc Exon Structure for
HMGA1P7
ECgene alternative splicing isoforms for
HMGA1P7

Expression for HMGA1P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGA1P7 Gene

mRNA differential expression in normal tissues according to GTEx for HMGA1P7 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x7.2), Brain - Putamen (basal ganglia) (x6.9), Brain - Hippocampus (x6.0), Brain - Caudate (basal ganglia) (x5.8), Brain - Substantia nigra (x5.5), Brain - Amygdala (x5.2), and Brain - Hypothalamus (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P7 Gene:

HMGA1P7

SOURCE GeneReport for Unigene cluster for HMGA1P7 Gene:

Hs.571061
genes like me logo Genes that share expression patterns with HMGA1P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGA1P7 Gene

Orthologs for HMGA1P7 Gene

Evolution for HMGA1P7 Gene

ENSEMBL:
Gene Tree for HMGA1P7 (if available)
TreeFam:
Gene Tree for HMGA1P7 (if available)

No data available for Orthologs for HMGA1P7 Gene

Paralogs for HMGA1P7 Gene

No data available for Paralogs for HMGA1P7 Gene

Variants for HMGA1P7 Gene

Sequence variations from dbSNP and Humsavar for HMGA1P7 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111279713 -- 134,118,589(+) CCAGA(C/T)GGGTG intron-variant, upstream-variant-2KB
rs111354022 -- 134,118,836(+) AATAA(-/AAAT)AAATA intron-variant, upstream-variant-2KB
rs113039755 -- 134,118,774(+) GATGG(C/T)GCCAC intron-variant, upstream-variant-2KB
rs113180338 -- 134,113,646(+) CTGAG(A/G)CACGA intron-variant, downstream-variant-500B
rs113316868 -- 134,113,723(+) CTCCA(A/G)CCGGA intron-variant, downstream-variant-500B

Relevant External Links for HMGA1P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P7 Gene

Disorders for HMGA1P7 Gene

Relevant External Links for HMGA1P7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMGA1P7

No disorders were found for HMGA1P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGA1P7 Gene

Publications for HMGA1P7 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
  2. HMGA1P7-pseudogene regulates H19 and Igf2 expression by a competitive endogenous RNA mechanism. (PMID: 27874091) De Martino M. … Esposito F. (Sci Rep 2016) 3 64
  3. MGA1-pseudogene expression is induced in human pituitary tumors. (PMID: 25894544) Esposito F. … Fusco A. (Cell Cycle 2015) 3 64
  4. HMGA1 pseudogenes as candidate proto-oncogenic competitive endogenous RNAs. (PMID: 25268743) Esposito F. … Fusco A. (Oncotarget 2014) 3 64
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for HMGA1P7 Gene

Sources for HMGA1P7 Gene

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