Aliases for HMGA1P5 Gene
Aliases for HMGA1P5 Gene
External Ids for HMGA1P5 Gene
- HGNC: 19120
- Entrez Gene: 387063
- Ensembl: ENSG00000233313
Previous HGNC Symbols for HMGA1P5 Gene
- HMGA1L5
Previous GeneCards Identifiers for HMGA1P5 Gene
- GC10M077037
Summaries for HMGA1P5 Gene
GeneCards Summary for HMGA1P5 Gene
HMGA1P5 (High Mobility Group AT-Hook 1 Pseudogene 5) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P5 Gene
Genomics for HMGA1P5 Gene
Regulatory Elements for HMGA1P5 Gene
Enhancers for HMGA1P5 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH10G075243 | 1.1 | ENCODE dbSUPER | 13.4 | +30.8 | 30813 | 4.7 | KLF17 RAD21 ZNF654 ZEB2 ZNF217 ZNF579 MBD2 CREB3 RAD51 SMARCA4 | ZNF503-AS1 RPL39P25 HMGA1P5 DUSP13 DUPD1 COMTD1 |
| GH10G075276 | 1.1 | Ensembl ENCODE dbSUPER | 10.8 | +0.2 | 246 | 0.8 | KLF1 L3MBTL2 NRF1 CEBPB ZBTB7A NFIC POLR2A SCRT2 MGA RBFOX2 | ZNF503-AS1 HMGA1P5 GC10M075276 |
| GH10G075261 | 2.5 | VISTA ENCODE dbSUPER | 4.4 | +13.8 | 13836 | 2.7 | BCOR PKNOX1 ESRRA ZMYM3 RAD21 ZIC2 FOSL1 CTBP1 TCF7L2 SMARCA5 | ZNF503-AS1 HMGA1P5 RPL39P25 COMTD1 |
| GH10G075238 | 0.8 | FANTOM5 | 13.4 | +38.3 | 38284 | 0.4 | SAP130 ZNF792 ZNF48 RARA ZNF316 NR2F6 L3MBTL2 NRF1 NFYC ZNF592 | ZNF503-AS1 RPL39P25 HMGA1P5 DUPD1 COMTD1 VDAC2 |
| GH10G075240 | 0.7 | ENCODE dbSUPER | 13.4 | +36.0 | 36023 | 1.2 | ZNF624 ZNF18 | RPL39P25 ZNF503-AS1 HMGA1P5 DUPD1 COMTD1 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HMGA1P5 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HMGA1P5 Gene
- Chromosome:
- 10
- Start:
- 75,275,136 bp from pter
- End:
- 75,276,646 bp from pter
- Size:
- 1,511 bases
- Orientation:
- Minus strand
Genomic View for HMGA1P5 Gene
Genes around HMGA1P5 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 10q22.2 by Ensembl
- 10q22.2 by Entrez Gene
- 10q22.2 by HGNC
HMGA1P5 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGA1P5 Gene
Proteins for HMGA1P5 Gene
Post-translational modifications for HMGA1P5 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HMGA1P5
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGA1P5
- Origene Custom Protein Services for HMGA1P5
- Search GeneTex for Proteins for HMGA1P5
Assay Products
No data available for DME Specific Peptides for HMGA1P5 Gene
Domains & Families for HMGA1P5 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P5 Gene
Function for HMGA1P5 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HMGA1P5
CRISPR Products
- Browse CRISPR knockouts for HMGA1P5
miRNA Products
- Search ViGene Biosciences for HMGA1P5
Inhibitory RNA Products
- Search ViGene Biosciences for HMGA1P5
Cell Line Products
- Search ViGene Biosciences for HMGA1P5
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P5 Gene
Localization for HMGA1P5 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGA1P5 Gene
Transcripts for HMGA1P5 Gene
mRNA/cDNA for HMGA1P5 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HMGA1P5
miRNA Products
- Search ViGene Biosciences for HMGA1P5
Inhibitory RNA Products
- Search ViGene Biosciences for HMGA1P5
Flow Cytometry Products
Expression for HMGA1P5 Gene
mRNA differential expression in normal tissues according to GTEx for HMGA1P5 Gene
This gene is overexpressed in Esophagus - Mucosa (x15.7) and Bladder (x4.6).
NURSA nuclear receptor signaling pathways regulating expression of HMGA1P5 Gene:
HMGA1P5
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P5 Gene
Orthologs for HMGA1P5 Gene
No data available for Orthologs for HMGA1P5 Gene
Paralogs for HMGA1P5 Gene
No data available for Paralogs for HMGA1P5 Gene
Variants for HMGA1P5 Gene
Relevant External Links for HMGA1P5 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGA1P5
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P5 Gene
Disorders for HMGA1P5 Gene
No disorders were found for HMGA1P5 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGA1P5 Gene
Publications for HMGA1P5 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
Products for HMGA1P5 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGA1P5
- Origene Custom Protein Services for HMGA1P5
- Browse OriGene Inhibitory RNA Products For HMGA1P5
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGA1P5
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGA1P5
- GenScript: Custom all cDNA clones Services for HMGA1P5
- GenScript Custom Purified and Recombinant Proteins Services for HMGA1P5
- GenScript Custom Assay Services for HMGA1P5
- GenScript Custom overexpressing Cell Line Services for HMGA1P5
- Browse GenScript CRISPR for HMGA1P5
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HMGA1P5
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HMGA1P5
- VectorBuilder custom plasmid, inducible vectors for HMGA1P5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HMGA1P5
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HMGA1P5 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer