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Aliases for HMGA1P5 Gene

Aliases for HMGA1P5 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 5 2 3 5
  • High Mobility Group AT-Hook 1-Like 5 2 3
  • HMGA1L5 3

External Ids for HMGA1P5 Gene

Previous HGNC Symbols for HMGA1P5 Gene

  • HMGA1L5

Previous GeneCards Identifiers for HMGA1P5 Gene

  • GC10M077037

Summaries for HMGA1P5 Gene

GeneCards Summary for HMGA1P5 Gene

HMGA1P5 (High Mobility Group AT-Hook 1 Pseudogene 5) is a Pseudogene.

Additional gene information for HMGA1P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P5 Gene

Genomics for HMGA1P5 Gene

Regulatory Elements for HMGA1P5 Gene

Enhancers for HMGA1P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H075243 1.1 ENCODE dbSUPER 13.4 +30.8 30813 4 BCOR ESRRA TAL1 KLF17 ZIC2 E2F1 MTA3 GATA3 CTBP1 FOXK2 ZNF503-AS1 RPL39P25 HMGA1P5 DUSP13 DUPD1 COMTD1
GH10H075276 1.1 Ensembl ENCODE dbSUPER 10.8 +0.2 246 0 NFIC KLF1 L3MBTL2 NRF1 SCRT2 CEBPB ZFX MGA ZNF503-AS1 HMGA1P5 GC10M075276
GH10H075261 2.5 VISTA ENCODE dbSUPER 4.4 +13.8 13836 2 BCOR PKNOX1 ESRRA ZMYM3 ZIC2 FOSL1 CTBP1 GATA3 GATAD2A SMARCE1 ZNF503-AS1 HMGA1P5 RPL39P25 COMTD1
GH10H075238 0.8 FANTOM5 13.4 +38.3 38284 0 SAP130 L3MBTL2 ZNF792 NFYC RARA ZNF592 ZNF316 ZKSCAN8 NR2C1 ZBTB33 ZNF503-AS1 RPL39P25 HMGA1P5 DUPD1 COMTD1 VDAC2
GH10H075240 0.7 ENCODE dbSUPER 13.4 +36.0 36023 1 ZNF624 ZNF18 RPL39P25 ZNF503-AS1 HMGA1P5 DUPD1 COMTD1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGA1P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGA1P5 Gene

Chromosome:
10
Start:
75,275,136 bp from pter
End:
75,276,646 bp from pter
Size:
1,511 bases
Orientation:
Minus strand

Genomic View for HMGA1P5 Gene

Genes around HMGA1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P5 Gene

Proteins for HMGA1P5 Gene

Post-translational modifications for HMGA1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P5 Gene

Domains & Families for HMGA1P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P5 Gene

Function for HMGA1P5 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HMGA1P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P5 Gene

Localization for HMGA1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGA1P5 Gene

Pathways & Interactions for HMGA1P5 Gene

SuperPathways for HMGA1P5 Gene

No Data Available

Interacting Proteins for HMGA1P5 Gene

Gene Ontology (GO) - Biological Process for HMGA1P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P5 Gene

Drugs & Compounds for HMGA1P5 Gene

No Compound Related Data Available

Transcripts for HMGA1P5 Gene

mRNA/cDNA for HMGA1P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HMGA1P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P5 Gene

No ASD Table

Relevant External Links for HMGA1P5 Gene

GeneLoc Exon Structure for
HMGA1P5
ECgene alternative splicing isoforms for
HMGA1P5

Expression for HMGA1P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGA1P5 Gene

mRNA differential expression in normal tissues according to GTEx for HMGA1P5 Gene

This gene is overexpressed in Esophagus - Mucosa (x15.7) and Bladder (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P5 Gene:

HMGA1P5
genes like me logo Genes that share expression patterns with HMGA1P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P5 Gene

Orthologs for HMGA1P5 Gene

Evolution for HMGA1P5 Gene

ENSEMBL:
Gene Tree for HMGA1P5 (if available)
TreeFam:
Gene Tree for HMGA1P5 (if available)

No data available for Orthologs for HMGA1P5 Gene

Paralogs for HMGA1P5 Gene

No data available for Paralogs for HMGA1P5 Gene

Variants for HMGA1P5 Gene

Relevant External Links for HMGA1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P5 Gene

Disorders for HMGA1P5 Gene

No disorders were found for HMGA1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGA1P5 Gene

Publications for HMGA1P5 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 60

Products for HMGA1P5 Gene

Sources for HMGA1P5 Gene

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