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Aliases for HMGA1P5 Gene

Aliases for HMGA1P5 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 5 2 3 5
  • High Mobility Group AT-Hook 1-Like 5 2 3
  • HMGA1L5 3

External Ids for HMGA1P5 Gene

Previous HGNC Symbols for HMGA1P5 Gene

  • HMGA1L5

Previous GeneCards Identifiers for HMGA1P5 Gene

  • GC10M077037

Summaries for HMGA1P5 Gene

GeneCards Summary for HMGA1P5 Gene

HMGA1P5 (High Mobility Group AT-Hook 1 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P5 Gene

Genomics for HMGA1P5 Gene

Regulatory Elements for HMGA1P5 Gene

Enhancers for HMGA1P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F075243 0.9 Ensembl ENCODE 13.4 +30.8 30813 4.7 HDGF KLF17 RAD21 ZNF654 ZEB2 ZNF217 MBD2 RAD51 IKZF1 ZBTB33 ZNF503-AS1 RPL39P25 HMGA1P5 DUSP13 DUPD1 COMTD1
GH10F075238 0.3 FANTOM5 13.4 +38.3 38284 0.4 SAP130 ZNF792 ZNF48 RARA ZNF316 NR2F6 E2F6 L3MBTL2 NRF1 NFYC ZNF503-AS1 RPL39P25 HMGA1P5 DUPD1 COMTD1 VDAC2
GH10F075240 0.2 ENCODE 13.4 +36.0 36023 1.2 ZNF18 RPL39P25 ZNF503-AS1 HMGA1P5 DUPD1 COMTD1
GH10F075126 0.9 Ensembl ENCODE 5.7 +149.1 149054 2.0 ZNF664 ZNF362 JUN CEBPB NFE2 NR3C1 NFE2L2 PPIAP13 HMGA1P5 RPS26P42 GC10P075147
GH10F075261 2 VISTA ENCODE 4.4 +13.8 13836 2.7 BCOR PKNOX1 ZMYM3 RAD21 ZIC2 CTBP1 TCF7L2 SMARCA5 GATAD2A KLF4 ZNF503-AS1 HMGA1P5 RPL39P25 COMTD1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HMGA1P5 on UCSC Golden Path with GeneCards custom track

Promoters for HMGA1P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001761735 346 201 CTCF POLR2A NRF1 ZBTB7A MGA

Genomic Location for HMGA1P5 Gene

Chromosome:
10
Start:
75,275,136 bp from pter
End:
75,276,646 bp from pter
Size:
1,511 bases
Orientation:
Minus strand

Genomic View for HMGA1P5 Gene

Genes around HMGA1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P5 Gene

Proteins for HMGA1P5 Gene

Post-translational modifications for HMGA1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P5 Gene

Domains & Families for HMGA1P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P5 Gene

Function for HMGA1P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P5 Gene

Localization for HMGA1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGA1P5 Gene

Pathways & Interactions for HMGA1P5 Gene

SuperPathways for HMGA1P5 Gene

No Data Available

Interacting Proteins for HMGA1P5 Gene

Gene Ontology (GO) - Biological Process for HMGA1P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P5 Gene

Transcripts for HMGA1P5 Gene

mRNA/cDNA for HMGA1P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P5 Gene

No ASD Table

Relevant External Links for HMGA1P5 Gene

GeneLoc Exon Structure for
HMGA1P5
ECgene alternative splicing isoforms for
HMGA1P5

Expression for HMGA1P5 Gene

mRNA expression in normal human tissues for HMGA1P5 Gene

mRNA differential expression in normal tissues according to GTEx for HMGA1P5 Gene

This gene is overexpressed in Esophagus - Mucosa (x15.7) and Bladder (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P5 Gene:

HMGA1P5
genes like me logo Genes that share expression patterns with HMGA1P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HMGA1P5 Gene

Orthologs for HMGA1P5 Gene

Evolution for HMGA1P5 Gene

ENSEMBL:
Gene Tree for HMGA1P5 (if available)
TreeFam:
Gene Tree for HMGA1P5 (if available)

No data available for Orthologs for HMGA1P5 Gene

Paralogs for HMGA1P5 Gene

No data available for Paralogs for HMGA1P5 Gene

Variants for HMGA1P5 Gene

Relevant External Links for HMGA1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P5 Gene

Disorders for HMGA1P5 Gene

No disorders were found for HMGA1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGA1P5 Gene

Publications for HMGA1P5 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGA1P5 Gene

Sources for HMGA1P5 Gene

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