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Aliases for HMGA1P5 Gene

Aliases for HMGA1P5 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 5 2 3 5
  • High Mobility Group AT-Hook 1-Like 5 2 3
  • HMGA1L5 3

External Ids for HMGA1P5 Gene

Previous HGNC Symbols for HMGA1P5 Gene

  • HMGA1L5

Previous GeneCards Identifiers for HMGA1P5 Gene

  • GC10M077037

Summaries for HMGA1P5 Gene

GeneCards Summary for HMGA1P5 Gene

HMGA1P5 (High Mobility Group AT-Hook 1 Pseudogene 5) is a Pseudogene.

Additional gene information for HMGA1P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P5 Gene

Genomics for HMGA1P5 Gene

GeneHancer (GH) Regulatory Elements for HMGA1P5 Gene

Promoters and enhancers for HMGA1P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I075276 Enhancer 1 Ensembl ENCODE dbSUPER 560.9 +0.2 245 0.8 KLF1 L3MBTL2 NRF1 CEBPB ZNF148 NFIC GMEB1 SCRT2 GABPB1 ZFX HMGA1P5 GC10M075276 ZNF503-AS1
GH10I075243 Enhancer 1 ENCODE dbSUPER 13.4 +30.8 30812 4.7 HDAC1 KLF17 ZEB2 ZNF217 SMARCA4 IKZF1 HNF4A KDM1A ZBTB33 ZNF24 ZNF503-AS1 RPL39P25 HMGA1P5 DUSP13 DUPD1 COMTD1
GH10I075238 Enhancer 0.7 FANTOM5 13.4 +38.3 38283 0.4 USF1 ZNF792 SAP130 PYGO2 ZNF48 RARA ZNF316 NR2F6 L3MBTL2 NFYC ZNF503-AS1 RPL39P25 HMGA1P5 DUPD1 COMTD1 VDAC2
GH10I075240 Enhancer 0.6 ENCODE dbSUPER 13.4 +36.0 36023 1.2 ZNF624 ZNF18 RPL39P25 ZNF503-AS1 HMGA1P5 DUPD1 COMTD1
GH10I075261 Enhancer 1.7 VISTA UCNEbase ENCODE dbSUPER 4.4 +13.8 13835 2.7 BCOR ESRRA PKNOX1 ZMYM3 ZIC2 FOSL1 CTBP1 GATA3 SMARCA5 SMARCE1 ZNF503-AS1 HMGA1P5 RPL39P25 COMTD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGA1P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGA1P5 Gene

Genomic Locations for HMGA1P5 Gene
chr10:75,275,136-75,276,646
(GRCh38/hg38)
Size:
1,511 bases
Orientation:
Minus strand
chr10:77,034,894-77,036,404
(GRCh37/hg19)

Genomic View for HMGA1P5 Gene

Genes around HMGA1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P5 Gene

Proteins for HMGA1P5 Gene

Post-translational modifications for HMGA1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P5 Gene

Domains & Families for HMGA1P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P5 Gene

Function for HMGA1P5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P5 Gene

Localization for HMGA1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGA1P5 Gene

Pathways & Interactions for HMGA1P5 Gene

SuperPathways for HMGA1P5 Gene

No Data Available

Interacting Proteins for HMGA1P5 Gene

Gene Ontology (GO) - Biological Process for HMGA1P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P5 Gene

Drugs & Compounds for HMGA1P5 Gene

No Compound Related Data Available

Transcripts for HMGA1P5 Gene

mRNA/cDNA for HMGA1P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P5 Gene

No ASD Table

Relevant External Links for HMGA1P5 Gene

GeneLoc Exon Structure for
HMGA1P5
ECgene alternative splicing isoforms for
HMGA1P5

Expression for HMGA1P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGA1P5 Gene

mRNA differential expression in normal tissues according to GTEx for HMGA1P5 Gene

This gene is overexpressed in Esophagus - Mucosa (x15.7) and Bladder (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P5 Gene:

HMGA1P5
genes like me logo Genes that share expression patterns with HMGA1P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P5 Gene

Orthologs for HMGA1P5 Gene

Evolution for HMGA1P5 Gene

ENSEMBL:
Gene Tree for HMGA1P5 (if available)
TreeFam:
Gene Tree for HMGA1P5 (if available)

No data available for Orthologs for HMGA1P5 Gene

Paralogs for HMGA1P5 Gene

No data available for Paralogs for HMGA1P5 Gene

Variants for HMGA1P5 Gene

Additional Variant Information for HMGA1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P5 Gene

Disorders for HMGA1P5 Gene

No disorders were found for HMGA1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGA1P5 Gene

Publications for HMGA1P5 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGA1P5 Gene

Sources for HMGA1P5 Gene

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