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HMGA1P4 Gene(Pseudogene)

High Mobility Group AT-Hook 1 Pseudogene 4

GCID:
GC09M128663
GIFtS:
13
Genes Participants
UDN Logo

Aliases for HMGA1P4 Gene

Aliases for HMGA1P4 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 4 2 3 5

External Ids for HMGA1P4 Gene

Previous GeneCards Identifiers for HMGA1P4 Gene

  • GC00U931402
  • GC09M131427

Summaries for HMGA1P4 Gene

GeneCards Summary for HMGA1P4 Gene

HMGA1P4 (High Mobility Group AT-Hook 1 Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P4 Gene

Genomics for HMGA1P4 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGA1P4 Gene

Enhancers for HMGA1P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G128666 0.9 ENCODE 0.7 -3.2 -3221 0.7 HDAC1 PKNOX1 ARNT GTF3C2 POLR3A EGR1 SCRT2 RCOR1 FOS KLF7 NAIF1 LOC101929314 URM1 CERCAM HMGA1P4 SET
GH09G128677 0.6 ENCODE 0.4 -14.4 -14383 1.0 MAX MNT YY1 JUND HNF4G IRF1 CUX1 HNF4A SET HMGA1P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGA1P4 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGA1P4 Gene

Chromosome:
9
Start:
128,663,134 bp from pter
End:
128,663,578 bp from pter
Size:
445 bases
Orientation:
Minus strand

Genomic View for HMGA1P4 Gene

Genes around HMGA1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P4 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGA1P4 Gene

Proteins for HMGA1P4 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGA1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P4 Gene

Domains & Families for HMGA1P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P4 Gene

Function for HMGA1P4 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P4 Gene

Localization for HMGA1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGA1P4 Gene

Pathways & Interactions for HMGA1P4 Gene

SuperPathways for HMGA1P4 Gene

PathCards logo More details on SuperPathways for HMGA1P4
No Data Available

Interacting Proteins for HMGA1P4 Gene

Gene Ontology (GO) - Biological Process for HMGA1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P4 Gene

Drugs & Compounds for HMGA1P4 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGA1P4 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGA1P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P4 Gene

No ASD Table

Relevant External Links for HMGA1P4 Gene

GeneLoc Exon Structure for
HMGA1P4
ECgene alternative splicing isoforms for
HMGA1P4

Expression for HMGA1P4 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGA1P4 Gene

mRNA expression in normal human tissues for HMGA1P4 Gene
mRNA expression by GTEx for HMGA1P4 Gene

mRNA differential expression in normal tissues according to GTEx for HMGA1P4 Gene

This gene is overexpressed in Spleen (x5.8) and Thyroid (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P4 Gene:

HMGA1P4
genes like me logo Genes that share expression patterns with HMGA1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P4 Gene

Orthologs for HMGA1P4 Gene

Evolution for HMGA1P4 Gene

ENSEMBL:
Gene Tree for HMGA1P4 (if available)
TreeFam:
Gene Tree for HMGA1P4 (if available)

No data available for Orthologs for HMGA1P4 Gene

Paralogs for HMGA1P4 Gene

No data available for Paralogs for HMGA1P4 Gene

Variants for HMGA1P4 Gene

Relevant External Links for HMGA1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P4 Gene

Disorders for HMGA1P4 Gene

No disorders were found for HMGA1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGA1P4 Gene

Publications for HMGA1P4 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64

Products for HMGA1P4 Gene

Sources for HMGA1P4 Gene

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