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HMGA1P2 Gene(Pseudogene)

High Mobility Group AT-Hook 1 Pseudogene 2

GCID:
GC04P073098
GIFtS:
15
Genes Participants
UDN Logo

Aliases for HMGA1P2 Gene

Aliases for HMGA1P2 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 2 2 3 5
  • High Mobility Group AT-Hook 1-Like 2 2 3
  • High Mobility Group Protein Isoforms I And Y-Like Protein 2 Pseudogene 3
  • HMGIYL2 3
  • HMGA1L2 3

External Ids for HMGA1P2 Gene

Previous HGNC Symbols for HMGA1P2 Gene

  • HMGA1L2

Previous GeneCards Identifiers for HMGA1P2 Gene

  • GC04P073965

Summaries for HMGA1P2 Gene

GeneCards Summary for HMGA1P2 Gene

HMGA1P2 (High Mobility Group AT-Hook 1 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P2 Gene

Genomics for HMGA1P2 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HMGA1P2 Gene

Enhancers for HMGA1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G072112 1.3 FANTOM5 ENCODE 18.7 -985.9 -985853 1.3 PKNOX1 WRNIP1 FEZF1 ZNF2 CBX5 FOS SP3 JUNB TBX21 SMARCA4 HMGA1P2 NPFFR2 GC04M072130
GH04G074092 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +996.1 996056 4.4 PKNOX1 ATF1 YY1 ZNF766 ELK1 GATA2 FOS KLF13 CAVIN1 ZNF592 CXCL3 CXCL8 CXCL2 EREG HMGA1P2 MTHFD2L LOC643014
GH04G073085 0.9 Ensembl ENCODE dbSUPER 0.4 -12.5 -12527 1.2 IRF2 IRF1 ENSG00000250220 ANKRD17 ENSG00000221639 RNU6ATAC5P HMGA1P2 COX18
GH04G073090 0.5 dbSUPER 0.4 -6.9 -6946 3.1 SCRT2 JUNB PRDM4 COX18 ANKRD17 ENSG00000250220 ENSG00000221639 HMGA1P2
GH04G073071 0.2 dbSUPER 0.3 -26.9 -26864 1.3 ENSG00000221639 COX18 HMGA1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMGA1P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMGA1P2 Gene

Chromosome:
4
Start:
73,098,741 bp from pter
End:
73,100,506 bp from pter
Size:
1,766 bases
Orientation:
Plus strand

Genomic View for HMGA1P2 Gene

Genes around HMGA1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGA1P2 Gene

Proteins for HMGA1P2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGA1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P2 Gene

Domains & Families for HMGA1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P2 Gene

Function for HMGA1P2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P2 Gene

Localization for HMGA1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMGA1P2 Gene

Pathways & Interactions for HMGA1P2 Gene

SuperPathways for HMGA1P2 Gene

PathCards logo More details on SuperPathways for HMGA1P2
No Data Available

Interacting Proteins for HMGA1P2 Gene

Gene Ontology (GO) - Biological Process for HMGA1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P2 Gene

Drugs & Compounds for HMGA1P2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGA1P2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HMGA1P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P2 Gene

No ASD Table

Relevant External Links for HMGA1P2 Gene

GeneLoc Exon Structure for
HMGA1P2
ECgene alternative splicing isoforms for
HMGA1P2

Expression for HMGA1P2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGA1P2 Gene

mRNA expression in normal human tissues for HMGA1P2 Gene
mRNA expression by GTEx for HMGA1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P2 Gene:

HMGA1P2
genes like me logo Genes that share expression patterns with HMGA1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P2 Gene

Orthologs for HMGA1P2 Gene

Evolution for HMGA1P2 Gene

ENSEMBL:
Gene Tree for HMGA1P2 (if available)
TreeFam:
Gene Tree for HMGA1P2 (if available)

No data available for Orthologs for HMGA1P2 Gene

Paralogs for HMGA1P2 Gene

No data available for Paralogs for HMGA1P2 Gene

Variants for HMGA1P2 Gene

Relevant External Links for HMGA1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P2 Gene

Disorders for HMGA1P2 Gene

Relevant External Links for HMGA1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HMGA1P2

No disorders were found for HMGA1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGA1P2 Gene

Publications for HMGA1P2 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu L.Z. … Landsman D. (Genome Res. 2003) 2 3 64
  2. Significant correlation between the breakpoints of rare clonal aberrations in benign solid tumors and the assignment of HMGIY retropseudogenes. (PMID: 11672774) Rogalla P. … Bullerdiek J. (Cancer Genet. Cytogenet. 2001) 2 3 64
  3. [The expression of pseudogene HMGA1L2 in thyroid lesions]. (PMID: 17098703) Wang G.L. … Liang W.H. (Yi Chuan 2006) 3 64

Products for HMGA1P2 Gene

Sources for HMGA1P2 Gene

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