Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMBOX1-IT1 Gene

Subcategory (RNA class) for HMBOX1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HMBOX1-IT1 Gene

  • HMBOX1 Intronic Transcript 1 2 3 5
  • HMBOX1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HMBOX1-IT1 Gene

Previous GeneCards Identifiers for HMBOX1-IT1 Gene

  • GC00U934038
  • GC08P028808

Summaries for HMBOX1-IT1 Gene

GeneCards Summary for HMBOX1-IT1 Gene

HMBOX1-IT1 (HMBOX1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMBOX1-IT1 Gene

Genomics for HMBOX1-IT1 Gene

Regulatory Elements for HMBOX1-IT1 Gene

Enhancers for HMBOX1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G028942 1.3 Ensembl ENCODE 0.4 -6.2 -6190 1.3 PKNOX1 FOXA2 ATF1 ARNT E2F7 ARID4B YY1 TCF12 GATA2 NCOA1 HMBOX1 INTS9 ENSG00000254129 KIF13B HMBOX1-IT1 ENSG00000273710
GH08G029032 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +83.6 83636 0.8 HDGF PKNOX1 CREB3L1 ARNT SIN3A DMAP1 YY1 ZNF143 ZNF263 SP3 KIF13B INTS9 HMBOX1 ENSG00000254129 LOC105379346 HMBOX1-IT1
GH08G028941 0.8 Ensembl ENCODE 0.4 -7.9 -7905 1.4 POLR2H RFX1 ZNF362 PRDM6 PRDM1 ZNF644 INTS9 HMBOX1 ENSG00000254129 KIF13B HMBOX1-IT1 ENSG00000273710
GH08G029027 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +79.1 79140 2.7 HDAC1 PKNOX1 TBL1XR1 TCF12 ZNF766 NCOA1 ELF4 GATAD2B TBX21 ZNF592 HMBOX1 INTS9 INTS9-AS1 ENSG00000254129 KIF13B DUSP4 LOC105379346 HMBOX1-IT1
GH08G029035 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +86.7 86693 2.1 CTCF PKNOX1 JUN CEBPG FEZF1 RAD21 ZNF664 SCRT2 FOS GATAD2A KIF13B INTS9 HMBOX1 ENSG00000254129 LOC105379346 HMBOX1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HMBOX1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HMBOX1-IT1 Gene

28,949,676 bp from pter
28,955,955 bp from pter
6,280 bases
Plus strand

Genomic View for HMBOX1-IT1 Gene

Genes around HMBOX1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMBOX1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMBOX1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HMBOX1-IT1 Gene

Proteins for HMBOX1-IT1 Gene

Post-translational modifications for HMBOX1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMBOX1-IT1 Gene

Domains & Families for HMBOX1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMBOX1-IT1 Gene

Function for HMBOX1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMBOX1-IT1 Gene

Localization for HMBOX1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HMBOX1-IT1 Gene

Pathways & Interactions for HMBOX1-IT1 Gene

SuperPathways for HMBOX1-IT1 Gene

No Data Available

Interacting Proteins for HMBOX1-IT1 Gene

Gene Ontology (GO) - Biological Process for HMBOX1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HMBOX1-IT1 Gene

Drugs & Compounds for HMBOX1-IT1 Gene

No Compound Related Data Available

Transcripts for HMBOX1-IT1 Gene

mRNA/cDNA for HMBOX1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMBOX1-IT1 Gene

No ASD Table

Relevant External Links for HMBOX1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HMBOX1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMBOX1-IT1 Gene

genes like me logo Genes that share expression patterns with HMBOX1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMBOX1-IT1 Gene

Orthologs for HMBOX1-IT1 Gene

Evolution for HMBOX1-IT1 Gene

Gene Tree for HMBOX1-IT1 (if available)
Gene Tree for HMBOX1-IT1 (if available)

No data available for Orthologs for HMBOX1-IT1 Gene

Paralogs for HMBOX1-IT1 Gene

No data available for Paralogs for HMBOX1-IT1 Gene

Variants for HMBOX1-IT1 Gene

Relevant External Links for HMBOX1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMBOX1-IT1 Gene

Disorders for HMBOX1-IT1 Gene

No disorders were found for HMBOX1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMBOX1-IT1 Gene

Publications for HMBOX1-IT1 Gene

No publications were found for HMBOX1-IT1 Gene.

Products for HMBOX1-IT1 Gene

Sources for HMBOX1-IT1 Gene

Loading form....