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Aliases for HM13-IT1 Gene

Subcategory (RNA class) for HM13-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HM13-IT1 Gene

  • HM13 Intronic Transcript 1 2 3 5
  • HM13 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HM13-IT1 Gene

Previous GeneCards Identifiers for HM13-IT1 Gene

  • GC00U933699
  • GC20P030151

Summaries for HM13-IT1 Gene

GeneCards Summary for HM13-IT1 Gene

HM13-IT1 (HM13 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HM13-IT1 Gene

Genomics for HM13-IT1 Gene

Regulatory Elements for HM13-IT1 Gene

Enhancers for HM13-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F031558 1.2 FANTOM5 Ensembl ENCODE 0.8 -1.7 -1683 6.6 HDGF ATF1 WRNIP1 ZFP64 ARID4B ZNF48 ZNF143 FOS PAF1 ZNF263 HM13 ID1 BCL2L1 COX4I2 DEFB124 MYLK2 HCK HM13-IT1 MCTS2P
GH20F031565 0.6 Ensembl ENCODE 0.4 +7.0 7024 9.8 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC HM13 COX4I2 ID1 MCTS2P MYLK2 HM13-AS1 PIR57123 HM13-IT1
GH20F031554 0.6 ENCODE 0.4 -7.9 -7865 1.2 PAF1 SMARCA4 POLR2A ZNF600 HM13 ID1 RNU6-384P COX4I2 MYLK2 MCTS2P HM13-IT1
GH20F031556 0.2 ENCODE 0.4 -5.9 -5888 1.7 SCRT1 CTCF ZNF654 RAD21 POLR2A ZBTB48 PBX2 IKZF1 ZNF143 SMC3 COX4I2 ID1 RNU6-384P MYLK2 MCTS2P HM13-IT1
GH20F031546 0.5 ENCODE 0.4 -13.3 -13291 7.4 PKNOX1 ATF1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 BRCA1 HM13 COX4I2 ID1 HM13-AS1 RNU6-384P DEFB124 MCTS2P HM13-IT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HM13-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HM13-IT1 Gene

Chromosome:
20
Start:
31,563,166 bp from pter
End:
31,564,076 bp from pter
Size:
911 bases
Orientation:
Plus strand

Genomic View for HM13-IT1 Gene

Genes around HM13-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HM13-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HM13-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HM13-IT1 Gene

Proteins for HM13-IT1 Gene

Post-translational modifications for HM13-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HM13-IT1 Gene

Domains & Families for HM13-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HM13-IT1 Gene

Function for HM13-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HM13-IT1 Gene

Localization for HM13-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HM13-IT1 Gene

Pathways & Interactions for HM13-IT1 Gene

SuperPathways for HM13-IT1 Gene

No Data Available

Interacting Proteins for HM13-IT1 Gene

Gene Ontology (GO) - Biological Process for HM13-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HM13-IT1 Gene

Transcripts for HM13-IT1 Gene

mRNA/cDNA for HM13-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HM13-IT1 Gene

No ASD Table

Relevant External Links for HM13-IT1 Gene

GeneLoc Exon Structure for
HM13-IT1
ECgene alternative splicing isoforms for
HM13-IT1

Expression for HM13-IT1 Gene

mRNA expression in normal human tissues for HM13-IT1 Gene

genes like me logo Genes that share expression patterns with HM13-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HM13-IT1 Gene

Orthologs for HM13-IT1 Gene

Evolution for HM13-IT1 Gene

ENSEMBL:
Gene Tree for HM13-IT1 (if available)
TreeFam:
Gene Tree for HM13-IT1 (if available)

No data available for Orthologs for HM13-IT1 Gene

Paralogs for HM13-IT1 Gene

No data available for Paralogs for HM13-IT1 Gene

Variants for HM13-IT1 Gene

Relevant External Links for HM13-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HM13-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HM13-IT1 Gene

Disorders for HM13-IT1 Gene

No disorders were found for HM13-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HM13-IT1 Gene

Publications for HM13-IT1 Gene

No publications were found for HM13-IT1 Gene.

Products for HM13-IT1 Gene

Sources for HM13-IT1 Gene

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