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Aliases for HM13-AS1 Gene

Subcategory (RNA class) for HM13-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HM13-AS1 Gene

  • HM13 Antisense RNA 1 2 3 5
  • HM13 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HM13-AS1 Gene

Previous GeneCards Identifiers for HM13-AS1 Gene

  • GC00U932991
  • GC20M030156

Summaries for HM13-AS1 Gene

GeneCards Summary for HM13-AS1 Gene

HM13-AS1 (HM13 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HM13-AS1 Gene

Genomics for HM13-AS1 Gene

Regulatory Elements for HM13-AS1 Gene

Enhancers for HM13-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G031601 2.3 VISTA FANTOM5 ENCODE dbSUPER 13.7 -34.2 -34189 11.5 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MYLK2 COX4I2 TSPY26P HM13 RNU6-384P HM13-AS1 MCTS2P PDRG1 ID1 LOC149935
GH20G031546 1.3 ENCODE dbSUPER 13 +23.4 23388 7.4 PKNOX1 FOXA2 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 HM13 COX4I2 ID1 HM13-AS1 RNU6-384P DEFB124 MCTS2P HM13-IT1
GH20G031541 1.2 Ensembl ENCODE dbSUPER 11.6 +29.4 29435 4.2 ESRRA KLF1 SIN3A ZMYM3 ZNF7 ZNF316 FOS NFE2 MAFK NFE2L2 HM13 HM13-AS1 RNU6-384P MCTS2P ENSG00000274364
GH20G031683 1.3 Ensembl ENCODE dbSUPER 10.5 -113.1 -113057 4.7 HDAC1 CTCF PKNOX1 ZNF146 TBL1XR1 ZNF133 EBF1 ZNF48 GATA2 EED COX4I2 BCL2L1 TPX2 RNU6-384P HM13-AS1 MYLK2 LOC105372589 ABALON
GH20G031536 0.8 ENCODE dbSUPER 11.6 +35.7 35716 1.8 POLR2A GLIS1 SCRT2 ZNF623 ZBTB7B HM13 ID1 HM13-AS1 RNU6-384P ENSG00000274364 MCTS2P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HM13-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HM13-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000136004 -37 1001 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3

Genomic Location for HM13-AS1 Gene

Chromosome:
20
Start:
31,567,707 bp from pter
End:
31,573,263 bp from pter
Size:
5,557 bases
Orientation:
Minus strand

Genomic View for HM13-AS1 Gene

Genes around HM13-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HM13-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HM13-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HM13-AS1 Gene

Proteins for HM13-AS1 Gene

Post-translational modifications for HM13-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HM13-AS1 Gene

Domains & Families for HM13-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HM13-AS1 Gene

Function for HM13-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HM13-AS1 Gene

Localization for HM13-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HM13-AS1 Gene

Pathways & Interactions for HM13-AS1 Gene

SuperPathways for HM13-AS1 Gene

No Data Available

Interacting Proteins for HM13-AS1 Gene

Gene Ontology (GO) - Biological Process for HM13-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HM13-AS1 Gene

Drugs & Compounds for HM13-AS1 Gene

No Compound Related Data Available

Transcripts for HM13-AS1 Gene

mRNA/cDNA for HM13-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HM13-AS1 Gene

No ASD Table

Relevant External Links for HM13-AS1 Gene

GeneLoc Exon Structure for
HM13-AS1
ECgene alternative splicing isoforms for
HM13-AS1

Expression for HM13-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HM13-AS1 Gene

SOURCE GeneReport for Unigene cluster for HM13-AS1 Gene:

Hs.743198
genes like me logo Genes that share expression patterns with HM13-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HM13-AS1 Gene

Orthologs for HM13-AS1 Gene

Evolution for HM13-AS1 Gene

ENSEMBL:
Gene Tree for HM13-AS1 (if available)
TreeFam:
Gene Tree for HM13-AS1 (if available)

No data available for Orthologs for HM13-AS1 Gene

Paralogs for HM13-AS1 Gene

No data available for Paralogs for HM13-AS1 Gene

Variants for HM13-AS1 Gene

Sequence variations from dbSNP and Humsavar for HM13-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000039728 -- 31,573,016(+) TTCCG(A/G)GCCAG intron-variant, upstream-variant-2KB, reference, missense
rs1000104641 -- 31,570,171(+) CAGCA(A/G)GAGAC intron-variant
rs1000315622 -- 31,575,021(+) CAGTG(C/G)CTCAC intron-variant, upstream-variant-2KB
rs1001603049 -- 31,569,581(+) GTTTA(A/C)GCACC intron-variant, downstream-variant-500B
rs1001708105 -- 31,573,812(+) TTTTC(A/G)TGTGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HM13-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4300n100 CNV gain 25217958
esv2763228 CNV gain 21179565
esv3645652 CNV gain 21293372
nsv3345 CNV deletion 18451855
nsv458961 CNV gain 19166990
nsv470546 CNV gain 18288195
nsv585911 CNV gain 21841781

Relevant External Links for HM13-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HM13-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HM13-AS1 Gene

Disorders for HM13-AS1 Gene

Relevant External Links for HM13-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HM13-AS1

No disorders were found for HM13-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HM13-AS1 Gene

Publications for HM13-AS1 Gene

No publications were found for HM13-AS1 Gene.

Products for HM13-AS1 Gene

Sources for HM13-AS1 Gene

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