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Aliases for HLX-AS1 Gene

Subcategory (RNA class) for HLX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HLX-AS1 Gene

  • HLX Antisense RNA 1 2 3

External Ids for HLX-AS1 Gene

Previous GeneCards Identifiers for HLX-AS1 Gene

  • GC01M221009

Summaries for HLX-AS1 Gene

GeneCards Summary for HLX-AS1 Gene

HLX-AS1 (HLX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLX-AS1 Gene

Genomics for HLX-AS1 Gene

Genomic Location for HLX-AS1 Gene

Start:
220,832,763 bp from pter
End:
220,880,140 bp from pter
Size:
47,378 bases
Orientation:
Minus strand

Genomic View for HLX-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HLX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLX-AS1 Gene

No data available for Regulatory Elements for HLX-AS1 Gene

Proteins for HLX-AS1 Gene

Post-translational modifications for HLX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLX-AS1 Gene

Domains for HLX-AS1 Gene

Gene Families for HLX-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLX-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLX-AS1 Gene

Function for HLX-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HLX-AS1 Gene

Localization for HLX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLX-AS1 Gene

Pathways for HLX-AS1 Gene

SuperPathways for HLX-AS1 Gene

No Data Available

Interacting Proteins for HLX-AS1 Gene

Gene Ontology (GO) - Biological Process for HLX-AS1 Gene

None

No data available for Pathways by source for HLX-AS1 Gene

Transcripts for HLX-AS1 Gene

mRNA/cDNA for HLX-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLX-AS1 Gene

No ASD Table

Relevant External Links for HLX-AS1 Gene

GeneLoc Exon Structure for
HLX-AS1
ECgene alternative splicing isoforms for
HLX-AS1

Expression for HLX-AS1 Gene

mRNA expression in normal human tissues for HLX-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HLX-AS1 Gene

This gene is overexpressed in Whole Blood (6.2) and Colon - Sigmoid (4.4).
genes like me logo Genes that share expressions with HLX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HLX-AS1 Gene

Orthologs for HLX-AS1 Gene

Evolution for HLX-AS1 Gene

ENSEMBL:
Gene Tree for HLX-AS1 (if available)
TreeFam:
Gene Tree for HLX-AS1 (if available)

No data available for Orthologs for HLX-AS1 Gene

Paralogs for HLX-AS1 Gene

No data available for Paralogs for HLX-AS1 Gene

Variants for HLX-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLX-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs984676 -- 220,835,080(+) TGATG(C/T)TTTGG intron-variant
rs1335918 -- 220,845,193(-) TTTAT(A/G)TTGAT intron-variant
rs1335919 -- 220,845,043(-) CCTCC(A/C)AAGAC intron-variant
rs1335920 -- 220,844,946(-) AGACT(A/G)TGAAT intron-variant
rs1389750 -- 220,866,829(-) tgaaa(A/C)ttgag intron-variant

Relevant External Links for HLX-AS1 Gene

HapMap Linkage Disequilibrium report
HLX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HLX-AS1 Gene

Disorders for HLX-AS1 Gene

No disorders were found for HLX-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for HLX-AS1 Gene

Publications for HLX-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  2. Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium. (PMID: 20445134) Smith N.L. … Vasan R.S. (Circ Cardiovasc Genet 2010) 3
  3. Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients. (PMID: 21326311) Bhatnagar P. … Keefer J.R. (J. Hum. Genet. 2011) 3

Products for HLX-AS1 Gene

Sources for HLX-AS1 Gene

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