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Aliases for HLX-AS1 Gene

Subcategory (RNA class) for HLX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HLX-AS1 Gene

  • HLX Antisense RNA 1 2 3 5

External Ids for HLX-AS1 Gene

Previous GeneCards Identifiers for HLX-AS1 Gene

  • GC01M221009

Summaries for HLX-AS1 Gene

GeneCards Summary for HLX-AS1 Gene

HLX-AS1 (HLX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HLX-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLX-AS1 Gene

Genomics for HLX-AS1 Gene

GeneHancer (GH) Regulatory Elements for HLX-AS1 Gene

Promoters and enhancers for HLX-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I220875 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 560.7 -0.1 -146 9.7 FOXA2 YY1 GLIS2 ZNF213 ZNF143 RUNX3 SP3 RXRA JUNB REST HLX HLX-AS1 ENSG00000272823 LINC01352 RNU6ATAC35P GC01P220882 GC01M220652
GH01I221721 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.3 -845.0 -844958 6.5 HDGF SMAD1 ATF1 ZNF133 YY1 TCF12 ZNF766 CBX5 ZNF143 ATF7 CICP13 ENSG00000272750 TAF1A RNU6-403P MIA3 DUSP10 HHIPL2 HLX-AS1 LOC105372945 GC01P221677
GH01I221097 Enhancer 1.4 FANTOM5 Ensembl ENCODE 4.1 -219.4 -219360 4.7 HDAC1 PKNOX1 FEZF1 RAD21 YY1 TCF12 FOS RXRA CEBPB REST HLX HLX-AS1 GC01M220652 GC01P221076 LOC101929750
GH01I220818 Enhancer 0.7 Ensembl ENCODE 5.3 +61.2 61155 1.9 SP1 JUND JUN FOS NR2F2 HLX MARC2 RNU6ATAC35P HLX-AS1 MARC1 GC01M220652
GH01I220874 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +5.6 5585 0.7 CTCF ZNF654 TRIM22 REST RAD21 NR2F2 YY1 SMC3 ZNF143 PRDM1 RNU6ATAC35P LINC01352 ENSG00000272823 HLX HLX-AS1 GC01M220652
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HLX-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLX-AS1 Gene

Genomic Locations for HLX-AS1 Gene
chr1:220,832,763-220,880,140
(GRCh38/hg38)
Size:
47,378 bases
Orientation:
Minus strand
chr1:221,006,105-221,053,482
(GRCh37/hg19)

Genomic View for HLX-AS1 Gene

Genes around HLX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLX-AS1 Gene

Proteins for HLX-AS1 Gene

Post-translational modifications for HLX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLX-AS1 Gene

Domains & Families for HLX-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLX-AS1 Gene

Function for HLX-AS1 Gene

Phenotypes From GWAS Catalog for HLX-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLX-AS1 Gene

Localization for HLX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLX-AS1 Gene

Pathways & Interactions for HLX-AS1 Gene

SuperPathways for HLX-AS1 Gene

No Data Available

Interacting Proteins for HLX-AS1 Gene

Gene Ontology (GO) - Biological Process for HLX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLX-AS1 Gene

Drugs & Compounds for HLX-AS1 Gene

No Compound Related Data Available

Transcripts for HLX-AS1 Gene

mRNA/cDNA for HLX-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLX-AS1 Gene

No ASD Table

Relevant External Links for HLX-AS1 Gene

GeneLoc Exon Structure for
HLX-AS1
ECgene alternative splicing isoforms for
HLX-AS1

Expression for HLX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLX-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HLX-AS1 Gene

This gene is overexpressed in Whole Blood (x6.2) and Colon - Sigmoid (x4.4).
genes like me logo Genes that share expression patterns with HLX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLX-AS1 Gene

Orthologs for HLX-AS1 Gene

Evolution for HLX-AS1 Gene

ENSEMBL:
Gene Tree for HLX-AS1 (if available)
TreeFam:
Gene Tree for HLX-AS1 (if available)

No data available for Orthologs for HLX-AS1 Gene

Paralogs for HLX-AS1 Gene

No data available for Paralogs for HLX-AS1 Gene

Variants for HLX-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLX-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000002641 -- 220,861,230(-) C/T intron_variant
rs1000019354 -- 220,852,621(-) C/T intron_variant
rs1000082277 -- 220,835,512(-) G/A intron_variant
rs1000152070 -- 220,877,097(-) G/T intron_variant
rs1000208734 -- 220,844,499(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HLX-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv819685 CNV gain 19587683

Additional Variant Information for HLX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLX-AS1 Gene

Disorders for HLX-AS1 Gene

Additional Disease Information for HLX-AS1

No disorders were found for HLX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLX-AS1 Gene

Publications for HLX-AS1 Gene

  1. Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients. (PMID: 21326311) Bhatnagar P … Keefer JR (Journal of human genetics 2011) 3 58
  2. Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium. (PMID: 20445134) Smith NL … Vasan RS (Circulation. Cardiovascular genetics 2010) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for HLX-AS1 Gene

Sources for HLX-AS1 Gene

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