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Aliases for HLX-AS1 Gene

Subcategory (RNA class) for HLX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HLX-AS1 Gene

  • HLX Antisense RNA 1 2 3 5

External Ids for HLX-AS1 Gene

Previous GeneCards Identifiers for HLX-AS1 Gene

  • GC01M221009

Summaries for HLX-AS1 Gene

GeneCards Summary for HLX-AS1 Gene

HLX-AS1 (HLX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLX-AS1 Gene

Genomics for HLX-AS1 Gene

Regulatory Elements for HLX-AS1 Gene

Enhancers for HLX-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F220876 1.2 FANTOM5 ENCODE 10.7 -0.1 -147 9.7 ZNF133 YY1 GLIS2 SP3 JUNB CBX8 SMARCA4 NBN CTCF ZNF146 HLX ENSG00000272823 HLX-AS1 LINC01352 RNU6ATAC35P GC01P220882
GH01F220818 0.8 Ensembl ENCODE 5.3 +61.2 61155 1.9 CTCF ESRRA PKNOX1 JUN ZNF316 FOS MAFK SCRT1 L3MBTL2 BHLHE40 HLX MARC2 RNU6ATAC35P HLX-AS1 MARC1
GH01F220709 1 Ensembl ENCODE 4.6 +169.4 169440 2.2 SOX13 SUZ12 SAP130 ARID4B EBF1 RARA TEAD3 EED NR2F6 CREM C1orf115 MARC2 HLX-AS1
GH01F221721 1.5 FANTOM5 Ensembl ENCODE 4.3 -844.8 -844761 7.0 HDGF ATF1 WRNIP1 ZNF133 YY1 GATA2 DEK ZNF263 JUNB KAT8 RNU6-403P DUSP10 HHIPL2 HLX-AS1 LOC105372945
GH01F221096 1.1 FANTOM5 Ensembl ENCODE 4.1 -219.5 -219461 5.6 HDAC1 PKNOX1 FEZF1 RAD21 YY1 FOS CEBPB ZEB2 RAD51 ZNF589 HLX HLX-AS1 GC01M220652 GC01P221076
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HLX-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HLX-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000553426 40 4201 TBP KLF17 RAD21 YY1 GLIS2 SCRT2 EGR2 ZNF362 SP3 CEBPB

Genomic Location for HLX-AS1 Gene

Chromosome:
1
Start:
220,832,763 bp from pter
End:
220,880,140 bp from pter
Size:
47,378 bases
Orientation:
Minus strand

Genomic View for HLX-AS1 Gene

Genes around HLX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLX-AS1 Gene

Proteins for HLX-AS1 Gene

Post-translational modifications for HLX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLX-AS1 Gene

Domains & Families for HLX-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLX-AS1 Gene

Function for HLX-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLX-AS1 Gene

Localization for HLX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLX-AS1 Gene

Pathways & Interactions for HLX-AS1 Gene

SuperPathways for HLX-AS1 Gene

No Data Available

Interacting Proteins for HLX-AS1 Gene

Gene Ontology (GO) - Biological Process for HLX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLX-AS1 Gene

Transcripts for HLX-AS1 Gene

mRNA/cDNA for HLX-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLX-AS1 Gene

No ASD Table

Relevant External Links for HLX-AS1 Gene

GeneLoc Exon Structure for
HLX-AS1
ECgene alternative splicing isoforms for
HLX-AS1

Expression for HLX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLX-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HLX-AS1 Gene

This gene is overexpressed in Whole Blood (x6.2) and Colon - Sigmoid (x4.4).
genes like me logo Genes that share expression patterns with HLX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HLX-AS1 Gene

Orthologs for HLX-AS1 Gene

Evolution for HLX-AS1 Gene

ENSEMBL:
Gene Tree for HLX-AS1 (if available)
TreeFam:
Gene Tree for HLX-AS1 (if available)

No data available for Orthologs for HLX-AS1 Gene

Paralogs for HLX-AS1 Gene

No data available for Paralogs for HLX-AS1 Gene

Variants for HLX-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLX-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10664325 -- 220,870,012(+) GTTTT(-/GTTTT)ACTCG intron-variant
rs10863568 -- 220,844,737(+) TGATT(C/G)TGCAC intron-variant
rs10863569 -- 220,845,598(+) CTTCA(C/T)GAATC intron-variant
rs10863570 -- 220,857,247(+) TTCTA(C/T)GCCAA intron-variant
rs11118616 -- 220,832,314(+) TGTGT(C/T)GTTCA nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HLX-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv819685 CNV gain 19587683

Relevant External Links for HLX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLX-AS1 Gene

Disorders for HLX-AS1 Gene

Relevant External Links for HLX-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HLX-AS1

No disorders were found for HLX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLX-AS1 Gene

Publications for HLX-AS1 Gene

  1. Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients. (PMID: 21326311) Bhatnagar P. … Keefer J.R. (J. Hum. Genet. 2011) 3 64
  2. Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium. (PMID: 20445134) Smith N.L. … Vasan R.S. (Circ Cardiovasc Genet 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for HLX-AS1 Gene

Sources for HLX-AS1 Gene

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