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Aliases for HLX-AS1 Gene

Subcategory (RNA class) for HLX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HLX-AS1 Gene

  • HLX Antisense RNA 1 2 3 5

External Ids for HLX-AS1 Gene

Previous GeneCards Identifiers for HLX-AS1 Gene

  • GC01M221009

Summaries for HLX-AS1 Gene

GeneCards Summary for HLX-AS1 Gene

HLX-AS1 (HLX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HLX-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLX-AS1 Gene

Genomics for HLX-AS1 Gene

Regulatory Elements for HLX-AS1 Gene

Enhancers for HLX-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H220875 1.6 FANTOM5 ENCODE dbSUPER 10.7 -0.1 -147 9.7 FOXA2 YY1 GLIS2 RUNX3 SP3 JUNB REST NBN HNF4A CTCF HLX ENSG00000272823 HLX-AS1 LINC01352 RNU6ATAC35P GC01P220882
GH01H221721 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.3 -845.0 -844959 6.5 HDGF ATF1 ZNF133 YY1 TCF12 ZNF766 CBX5 GATA2 ZNF143 ATF7 CICP13 ENSG00000272750 TAF1A RNU6-403P MIA3 DUSP10 HHIPL2 HLX-AS1 LOC105372945
GH01H221097 1.5 FANTOM5 Ensembl ENCODE 4.1 -219.4 -219360 4.7 HDAC1 PKNOX1 FEZF1 RAD21 YY1 TCF12 FOS CEBPB REST ZNF589 HLX HLX-AS1 GC01M220652 GC01P221076
GH01H220818 0.8 Ensembl ENCODE 5.3 +61.2 61155 1.9 JUND JUN FOS FOXP2 NR2F2 HLX MARC2 RNU6ATAC35P HLX-AS1 MARC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLX-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HLX-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000020421 -160 3401 TBP ZSCAN4 KLF17 RAD21 YY1 GLIS2 SCRT2 EGR2 SP3 ZNF362

Genomic Locations for HLX-AS1 Gene

Genomic Locations for HLX-AS1 Gene
47,378 bases
Minus strand

Genomic View for HLX-AS1 Gene

Genes around HLX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLX-AS1 Gene

Proteins for HLX-AS1 Gene

Post-translational modifications for HLX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLX-AS1 Gene

Domains & Families for HLX-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLX-AS1 Gene

Function for HLX-AS1 Gene

Phenotypes From GWAS Catalog for HLX-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLX-AS1 Gene

Localization for HLX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLX-AS1 Gene

Pathways & Interactions for HLX-AS1 Gene

SuperPathways for HLX-AS1 Gene

No Data Available

Interacting Proteins for HLX-AS1 Gene

Gene Ontology (GO) - Biological Process for HLX-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HLX-AS1 Gene

Drugs & Compounds for HLX-AS1 Gene

No Compound Related Data Available

Transcripts for HLX-AS1 Gene

mRNA/cDNA for HLX-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLX-AS1 Gene

No ASD Table

Relevant External Links for HLX-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HLX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLX-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HLX-AS1 Gene

This gene is overexpressed in Whole Blood (x6.2) and Colon - Sigmoid (x4.4).
genes like me logo Genes that share expression patterns with HLX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLX-AS1 Gene

Orthologs for HLX-AS1 Gene

Evolution for HLX-AS1 Gene

Gene Tree for HLX-AS1 (if available)
Gene Tree for HLX-AS1 (if available)

No data available for Orthologs for HLX-AS1 Gene

Paralogs for HLX-AS1 Gene

No data available for Paralogs for HLX-AS1 Gene

Variants for HLX-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLX-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000002641 -- 220,861,230(+) GCTTT(C/T)TCTTG intron-variant
rs1000019354 -- 220,852,621(+) TCTTA(C/T)GTCCT intron-variant
rs1000082277 -- 220,835,512(+) CAAAT(A/G)GAAAT intron-variant
rs1000152070 -- 220,877,097(+) AAGGG(G/T)TAGAG intron-variant
rs1000208734 -- 220,844,499(+) TCTGA(A/G)TATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HLX-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv819685 CNV gain 19587683

Relevant External Links for HLX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLX-AS1 Gene

Disorders for HLX-AS1 Gene

Relevant External Links for HLX-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HLX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLX-AS1 Gene

Publications for HLX-AS1 Gene

  1. Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients. (PMID: 21326311) Bhatnagar P … Keefer JR (Journal of human genetics 2011) 3 60
  2. Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium. (PMID: 20445134) Smith NL … Vasan RS (Circulation. Cardiovascular genetics 2010) 3 60
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for HLX-AS1 Gene

Sources for HLX-AS1 Gene

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