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Aliases for HLTF-AS1 Gene

Subcategory (RNA class) for HLTF-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HLTF-AS1 Gene

  • HLTF Antisense RNA 1 2 3 5
  • HLTF Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HLTF-AS1 Gene

Previous GeneCards Identifiers for HLTF-AS1 Gene

  • GC00U933488
  • GC03P148805

Summaries for HLTF-AS1 Gene

GeneCards Summary for HLTF-AS1 Gene

HLTF-AS1 (HLTF Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLTF-AS1 Gene

Genomics for HLTF-AS1 Gene

Regulatory Elements for HLTF-AS1 Gene

Enhancers for HLTF-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G149144 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +60.1 60093 3.5 GATA3 KLF1 KLF9 ETV6 SPI1 NR2F2 HLTF HLTF-AS1 GYG1 HPS3 GC03M149173
GH03G149042 0.9 Ensembl ENCODE 11.5 -42.7 -42650 2.5 HLF JUNB ZNF384 TBX21 ARID3A JUND FOS PRDM1 HLTF HLTF-AS1 GYG1 UBQLN4P1
GH03G149085 1.1 ENCODE 0.7 -0.2 -234 2.2 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 HLTF HLTF-AS1 GYG1
GH03G149015 1.4 Ensembl ENCODE dbSUPER 0.2 -67.6 -67566 7.0 PKNOX1 FOXA2 NFIB RAD21 YY1 GATA2 SCRT2 FOS EGR2 CEBPB GYG1 UBQLN4P1 HLTF HLTF-AS1
GH03G148998 1.2 Ensembl ENCODE dbSUPER 0.2 -86.9 -86919 2.3 HLF CEBPB CEBPG RAD21 NFIL3 ZNF316 MAFF CEBPA HNF4A MAFK HLTF GYG1 HLTF-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLTF-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HLTF-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000159913 -32 1401 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766

Genomic Location for HLTF-AS1 Gene

Chromosome:
3
Start:
149,086,332 bp from pter
End:
149,102,823 bp from pter
Size:
16,492 bases
Orientation:
Plus strand

Genomic View for HLTF-AS1 Gene

Genes around HLTF-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLTF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLTF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLTF-AS1 Gene

Proteins for HLTF-AS1 Gene

Post-translational modifications for HLTF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLTF-AS1 Gene

Domains & Families for HLTF-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLTF-AS1 Gene

Function for HLTF-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLTF-AS1 Gene

Localization for HLTF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLTF-AS1 Gene

Pathways & Interactions for HLTF-AS1 Gene

SuperPathways for HLTF-AS1 Gene

No Data Available

Interacting Proteins for HLTF-AS1 Gene

Gene Ontology (GO) - Biological Process for HLTF-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLTF-AS1 Gene

Drugs & Compounds for HLTF-AS1 Gene

No Compound Related Data Available

Transcripts for HLTF-AS1 Gene

mRNA/cDNA for HLTF-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLTF-AS1 Gene

HLTF antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HLTF-AS1 Gene

No ASD Table

Relevant External Links for HLTF-AS1 Gene

GeneLoc Exon Structure for
HLTF-AS1
ECgene alternative splicing isoforms for
HLTF-AS1

Expression for HLTF-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLTF-AS1 Gene

SOURCE GeneReport for Unigene cluster for HLTF-AS1 Gene:

Hs.742423
genes like me logo Genes that share expression patterns with HLTF-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLTF-AS1 Gene

Orthologs for HLTF-AS1 Gene

Evolution for HLTF-AS1 Gene

ENSEMBL:
Gene Tree for HLTF-AS1 (if available)
TreeFam:
Gene Tree for HLTF-AS1 (if available)

No data available for Orthologs for HLTF-AS1 Gene

Paralogs for HLTF-AS1 Gene

No data available for Paralogs for HLTF-AS1 Gene

Variants for HLTF-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLTF-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000168324 -- 149,090,272(+) ATACA(C/G)AAATT intron-variant
rs1000331839 -- 149,099,596(+) CAGCA(C/T)CTGCC intron-variant
rs1000400727 -- 149,088,705(+) ACCCC(-/CAGCCA)CACAC intron-variant
rs1000496840 -- 149,084,515(+) GGAGG(A/C)TGAGG intron-variant, upstream-variant-2KB
rs1000522651 -- 149,085,006(+) CACGG(C/T)AAAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HLTF-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2726036 CNV deletion 23290073
nsv528849 CNV gain 19592680
nsv829753 CNV gain 17160897

Relevant External Links for HLTF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLTF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLTF-AS1 Gene

Disorders for HLTF-AS1 Gene

Relevant External Links for HLTF-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HLTF-AS1

No disorders were found for HLTF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLTF-AS1 Gene

Publications for HLTF-AS1 Gene

No publications were found for HLTF-AS1 Gene.

Products for HLTF-AS1 Gene

Sources for HLTF-AS1 Gene

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