Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HLTF-AS1 Gene

Subcategory (RNA class) for HLTF-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HLTF-AS1 Gene

  • HLTF Antisense RNA 1 2 3 5
  • HLTF Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HLTF-AS1 Gene

Previous GeneCards Identifiers for HLTF-AS1 Gene

  • GC00U933488
  • GC03P148805

Summaries for HLTF-AS1 Gene

GeneCards Summary for HLTF-AS1 Gene

HLTF-AS1 (HLTF Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HLTF-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLTF-AS1 Gene

Genomics for HLTF-AS1 Gene

GeneHancer (GH) Regulatory Elements for HLTF-AS1 Gene

Promoters and enhancers for HLTF-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I149085 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.2 -233 2.2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF766 HLTF HLTF-AS1 HPS3 GYG1
GH03I149144 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +60.1 60092 3.5 EBF1 ETV6 ELF1 SPI1 HLTF HLTF-AS1 GYG1 HPS3 GC03M149173
GH03I149042 Enhancer 0.7 Ensembl ENCODE 11.5 -42.6 -42649 2.5 JUND HLF JUNB ZNF384 ATF7 ATF2 PRDM1 HLTF HLTF-AS1 GYG1 UBQLN4P1
GH03I148990 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.2 -94.5 -94482 3.1 CLOCK ATF1 ARID4B SIN3A DMAP1 ZBTB7B ZNF48 GLIS2 ELK1 ZNF143 GYG1 HLTF HLTF-AS1
GH03I149095 Enhancer 0.9 Ensembl ENCODE 0.4 +9.4 9373 0.9 BACH1 BMI1 BATF IRF4 NFATC1 IKZF2 JUNB TRIM22 DPF2 ZNF217 ENSG00000201031 GC03M149095 HLTF GYG1 MED28P2 HLTF-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HLTF-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLTF-AS1 Gene

Genomic Locations for HLTF-AS1 Gene
chr3:149,086,332-149,102,823
(GRCh38/hg38)
Size:
16,492 bases
Orientation:
Plus strand
chr3:148,804,119-148,820,610
(GRCh37/hg19)

Genomic View for HLTF-AS1 Gene

Genes around HLTF-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLTF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLTF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLTF-AS1 Gene

Proteins for HLTF-AS1 Gene

Post-translational modifications for HLTF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLTF-AS1 Gene

Domains & Families for HLTF-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLTF-AS1 Gene

Function for HLTF-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLTF-AS1 Gene

Localization for HLTF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLTF-AS1 Gene

Pathways & Interactions for HLTF-AS1 Gene

SuperPathways for HLTF-AS1 Gene

No Data Available

Interacting Proteins for HLTF-AS1 Gene

Gene Ontology (GO) - Biological Process for HLTF-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLTF-AS1 Gene

Drugs & Compounds for HLTF-AS1 Gene

No Compound Related Data Available

Transcripts for HLTF-AS1 Gene

mRNA/cDNA for HLTF-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLTF-AS1 Gene

HLTF antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLTF-AS1 Gene

No ASD Table

Relevant External Links for HLTF-AS1 Gene

GeneLoc Exon Structure for
HLTF-AS1
ECgene alternative splicing isoforms for
HLTF-AS1

Expression for HLTF-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLTF-AS1 Gene

SOURCE GeneReport for Unigene cluster for HLTF-AS1 Gene:

Hs.742423
genes like me logo Genes that share expression patterns with HLTF-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLTF-AS1 Gene

Orthologs for HLTF-AS1 Gene

Evolution for HLTF-AS1 Gene

ENSEMBL:
Gene Tree for HLTF-AS1 (if available)
TreeFam:
Gene Tree for HLTF-AS1 (if available)

No data available for Orthologs for HLTF-AS1 Gene

Paralogs for HLTF-AS1 Gene

No data available for Paralogs for HLTF-AS1 Gene

Variants for HLTF-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLTF-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000168324 -- 149,090,272(+) G/C intron_variant
rs1000331839 -- 149,099,596(+) C/T intron_variant
rs1000400727 -- 149,088,705(+) CAGCCACA/CA intron_variant
rs1000496840 -- 149,084,515(+) C/A upstream_transcript_variant
rs1000522651 -- 149,085,006(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HLTF-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2726036 CNV deletion 23290073
nsv528849 CNV gain 19592680
nsv829753 CNV gain 17160897

Additional Variant Information for HLTF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLTF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLTF-AS1 Gene

Disorders for HLTF-AS1 Gene

Additional Disease Information for HLTF-AS1

No disorders were found for HLTF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLTF-AS1 Gene

Publications for HLTF-AS1 Gene

No publications were found for HLTF-AS1 Gene.

Products for HLTF-AS1 Gene

Sources for HLTF-AS1 Gene

Content
Loading form....