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Aliases for HLCS-IT1 Gene

Subcategory (RNA class) for HLCS-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HLCS-IT1 Gene

  • HLCS Intronic Transcript 1 2 3 5
  • HLCS Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Bde1 3

External Ids for HLCS-IT1 Gene

Previous GeneCards Identifiers for HLCS-IT1 Gene

  • GC00U932982
  • GC21M038177

Summaries for HLCS-IT1 Gene

GeneCards Summary for HLCS-IT1 Gene

HLCS-IT1 (HLCS Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HLCS-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLCS-IT1 Gene

Genomics for HLCS-IT1 Gene

Regulatory Elements for HLCS-IT1 Gene

Enhancers for HLCS-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H036787 1.1 Ensembl ENCODE 0.4 +18.0 17960 0.8 PKNOX1 SIN3A GLIS2 ZNF350 SMARCC2 FOS EGR2 CEBPB USF2 ZNF592 ENSG00000242553 HLCS HLCS-IT1 GC21P036719 GC21P036720
GH21H036772 1 Ensembl ENCODE 0.3 +33.0 32957 1.1 TFAP4 NFIA MAX ZNF644 RAD21 RARA YY1 TEAD3 ZNF121 JUND SIM2 ENSG00000224269 HLCS-IT1 GC21P036719 GC21P036720
GH21H036792 0.6 ENCODE 0.4 +13.6 13580 0.1 ZSCAN5A SCRT2 USF2 MNT FOS ZNF600 HLCS-IT1 GC21P036719 GC21P036720
GH21H036783 0.8 ENCODE 0.3 +22.0 22031 1.2 MXI1 ZBTB21 JUN ZSCAN4 MAX GLI4 ZNF48 ZEB1 ZNF155 POLR2A DYRK1A ENSG00000242553 SETD4 MORC3 SIM2 HLCS-IT1 GC21P036720 GC21P036719
GH21H036730 1.1 ENCODE dbSUPER 0.2 +75.4 75350 0.2 FOXA2 MLX DNMT3B THRB RARA CREM HMG20B CEBPB MIER2 PPARG ENSG00000224269 SIM2 GC21P036719 GC21P036720 HLCS-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLCS-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLCS-IT1 Gene

Genomic Locations for HLCS-IT1 Gene
2,301 bases
Minus strand

Genomic View for HLCS-IT1 Gene

Genes around HLCS-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLCS-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLCS-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HLCS-IT1 Gene

Proteins for HLCS-IT1 Gene

Post-translational modifications for HLCS-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLCS-IT1 Gene

Domains & Families for HLCS-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLCS-IT1 Gene

Function for HLCS-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLCS-IT1 Gene

Localization for HLCS-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLCS-IT1 Gene

Pathways & Interactions for HLCS-IT1 Gene

SuperPathways for HLCS-IT1 Gene

No Data Available

Interacting Proteins for HLCS-IT1 Gene

Gene Ontology (GO) - Biological Process for HLCS-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HLCS-IT1 Gene

Drugs & Compounds for HLCS-IT1 Gene

No Compound Related Data Available

Transcripts for HLCS-IT1 Gene

mRNA/cDNA for HLCS-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLCS-IT1 Gene

No ASD Table

Relevant External Links for HLCS-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HLCS-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLCS-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HLCS-IT1 Gene

This gene is overexpressed in Testis (x9.6).
genes like me logo Genes that share expression patterns with HLCS-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLCS-IT1 Gene

Orthologs for HLCS-IT1 Gene

Evolution for HLCS-IT1 Gene

Gene Tree for HLCS-IT1 (if available)
Gene Tree for HLCS-IT1 (if available)

No data available for Orthologs for HLCS-IT1 Gene

Paralogs for HLCS-IT1 Gene

No data available for Paralogs for HLCS-IT1 Gene

Variants for HLCS-IT1 Gene

Relevant External Links for HLCS-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLCS-IT1 Gene

Disorders for HLCS-IT1 Gene

No disorders were found for HLCS-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HLCS-IT1 Gene

Publications for HLCS-IT1 Gene

No publications were found for HLCS-IT1 Gene.

Products for HLCS-IT1 Gene

Sources for HLCS-IT1 Gene

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