Aliases for HLCS-IT1 Gene
Subcategory (RNA class) for HLCS-IT1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for HLCS-IT1 Gene
External Ids for HLCS-IT1 Gene
- HGNC: 41343
- Entrez Gene: 100874294
- Ensembl: ENSG00000237646
Previous GeneCards Identifiers for HLCS-IT1 Gene
- GC00U932982
- GC21M038177
Summaries for HLCS-IT1 Gene
GeneCards Summary for HLCS-IT1 Gene
HLCS-IT1 (HLCS Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLCS-IT1 Gene
Genomics for HLCS-IT1 Gene
Regulatory Elements for HLCS-IT1 Gene
Enhancers for HLCS-IT1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH21G036787 | 1.1 | Ensembl ENCODE | 0.4 | +18.0 | 17960 | 0.8 | PKNOX1 SIN3A GLIS2 ZNF350 SMARCC2 FOS EGR2 USF2 CEBPB ZNF592 | ENSG00000242553 SETD4 HLCS HLCS-IT1 GC21P036719 GC21P036720 |
| GH21G036806 | 0.5 | ENCODE | 0.7 | -1.3 | -1286 | 1.4 | ARID1B JUND FOS | SIM2 ENSG00000224269 HLCS HLCS-IT1 LOC105369305 |
| GH21G036772 | 1 | Ensembl ENCODE | 0.3 | +33.0 | 32957 | 1.1 | TFAP4 MAX ZNF644 ZBTB7B RAD21 RARA YY1 TEAD3 ZNF121 NR2F6 | ENSG00000224269 SIM2 HLCS-IT1 GC21P036719 GC21P036720 |
| GH21G036799 | 0.7 | ENCODE | 0.4 | +6.3 | 6328 | 0.7 | CTCF ESRRA BHLHE40 DPF2 CHD7 RAD21 NR2F2 JUND CTBP1 POLR2A | CLDN14 HLCS HLCS-IT1 GC21P036719 GC21P036720 |
| GH21G036783 | 0.8 | ENCODE | 0.3 | +22.0 | 22031 | 1.2 | MXI1 ZBTB21 JUN ZSCAN4 MAX GLI4 ZNF48 ZEB1 ZNF155 POLR2A | ENSG00000242553 SETD4 MORC3 SIM2 HLCS-IT1 GC21P036719 GC21P036720 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HLCS-IT1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HLCS-IT1 Gene
- Chromosome:
- 21
- Start:
- 36,803,984 bp from pter
- End:
- 36,806,284 bp from pter
- Size:
- 2,301 bases
- Orientation:
- Minus strand
Genomic View for HLCS-IT1 Gene
Genes around HLCS-IT1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.13 by Ensembl
- 21q22.13 by Entrez Gene
- 21q22.13 by HGNC
HLCS-IT1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for HLCS-IT1 Gene
Proteins for HLCS-IT1 Gene
Post-translational modifications for HLCS-IT1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HLCS-IT1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HLCS-IT1
- Origene Custom Protein Services for HLCS-IT1
- Search GeneTex for Proteins for HLCS-IT1
Assay Products
No data available for DME Specific Peptides for HLCS-IT1 Gene
Domains & Families for HLCS-IT1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLCS-IT1 Gene
Function for HLCS-IT1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HLCS-IT1
CRISPR Products
- Browse CRISPR knockouts for HLCS-IT1
miRNA Products
- Search ViGene Biosciences for HLCS-IT1
Inhibitory RNA Products
- Search ViGene Biosciences for HLCS-IT1
Cell Line Products
- Search ViGene Biosciences for HLCS-IT1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLCS-IT1 Gene
Localization for HLCS-IT1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLCS-IT1 Gene
Transcripts for HLCS-IT1 Gene
mRNA/cDNA for HLCS-IT1 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HLCS-IT1
miRNA Products
- Search ViGene Biosciences for HLCS-IT1
Inhibitory RNA Products
- Search ViGene Biosciences for HLCS-IT1
Flow Cytometry Products
Expression for HLCS-IT1 Gene
mRNA differential expression in normal tissues according to GTEx for HLCS-IT1 Gene
This gene is overexpressed in Testis (x9.6).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLCS-IT1 Gene
Orthologs for HLCS-IT1 Gene
No data available for Orthologs for HLCS-IT1 Gene
Paralogs for HLCS-IT1 Gene
No data available for Paralogs for HLCS-IT1 Gene
Variants for HLCS-IT1 Gene
Relevant External Links for HLCS-IT1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HLCS-IT1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLCS-IT1 Gene
Disorders for HLCS-IT1 Gene
No disorders were found for HLCS-IT1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HLCS-IT1 Gene
Publications for HLCS-IT1 Gene
No publications were found for HLCS-IT1 Gene.
Products for HLCS-IT1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HLCS-IT1
- Origene Custom Protein Services for HLCS-IT1
- Browse OriGene Inhibitory RNA Products For HLCS-IT1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HLCS-IT1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HLCS-IT1
- GenScript: Custom all cDNA clones Services for HLCS-IT1
- GenScript Custom Purified and Recombinant Proteins Services for HLCS-IT1
- GenScript Custom Assay Services for HLCS-IT1
- GenScript Custom overexpressing Cell Line Services for HLCS-IT1
- Browse GenScript CRISPR for HLCS-IT1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HLCS-IT1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HLCS-IT1
- VectorBuilder custom plasmid, inducible vectors for HLCS-IT1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HLCS-IT1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HLCS-IT1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer